Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq28094 116 9e-21 seq35388 104 5e-17 seq10788 102 2e-16 seq3640 100 7e-16 seq19930 98.7 2e-15 seq5953 95.1 3e-14 seq23417 91.5 3e-13 seq17739 91.5 3e-13 seq13648 91.5 3e-13 seq2664 86.0 1e-11 >seq28094 Length=1202 Score = 116 bits (128), Expect = 9e-21 Identities = 146/198 (74%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | ||||| || || || || || Sbjct 834 GTCGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCGAGCTGCTTGCCG 893 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || || || || || || || ||||| ||||| ||||| Sbjct 894 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 953 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||||||||| | || ||||| || ||||||||||||||||| || || Sbjct 954 -ACGTTCTCGATGGTATCGCTGGACTCGACCTCGAGCGTAATAGTCTTACCAGTCAGGGT 1012 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 1013 CTTGACGAAGATCTGCAT 1030 >seq35388 Length=1012 Score = 104 bits (114), Expect = 5e-17 Identities = 153/214 (71%), Gaps = 2/214 (1%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||| ||||| || || ||||| | || || | ||||| Sbjct 239 AAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTC 180 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || ||||| || | ||| || || || || || || || ||||| Sbjct 179 CTCAAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTATC 120 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||||||||| ||||| || || || | ||| || | || ||||| || ||||||| Sbjct 119 CTGAATCTTCTGCTTC-ACGTTCTCGATGGTGTCCGACGACTCGACCTCGAGAGTAATAG 61 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| || | || || || || |||||||| Sbjct 60 TCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 27 >seq10788 Length=3043 Score = 102 bits (112), Expect = 2e-16 Identities = 143/198 (72%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | |||||| || || || || || Sbjct 2310 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGACCGTCCTCGAGCTGCTTGCCC 2369 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 ||||| || || | ||| || || || || || || || || ||||||||||| ||| || Sbjct 2370 GCAAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGAATCTTCTGC-TT 2428 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | ||| ||| | || ||||| || || || |||||||| ||||| || Sbjct 2429 CACGTTCTCAATGGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTACCCGTAAGGGT 2488 Query 104542 TTTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 2489 CTTGACGAAGATCTGCAT 2506 >seq3640 Length=10544 Score = 100 bits (110), Expect = 7e-16 Identities = 149/205 (73%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | ||||| || || || || || Sbjct 10409 GTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCAAGCTGCTTGCCG 10350 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || ||||| || || || || ||||||||||| ||| || Sbjct 10349 GCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 10291 Query 104482 TACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | ||| || | ||| || ||||| || ||||| ||||| || || || | Sbjct 10290 CACGTTCTCAATGGTGTC-CGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTGAGGG 10232 Query 104541 TTTTTACAAATATCTGCATT-TTGT 104564 | || || || ||||||||| |||| Sbjct 10231 TCTTCACGAAGATCTGCATTGTTGT 10207 >seq19930 Length=1350 Score = 98.7 bits (108), Expect = 2e-15 Identities = 154/215 (72%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || || || ||||| || || ||||||| || || | ||||| Sbjct 362 AAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTC 303 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| || || || || || || || || || Sbjct 302 CTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTC 243 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGT-TCTACCTCTAGTGTAATA 104524 ||| ||||| ||||| || || || | ||| || | ||| || ||||| || |||||| Sbjct 242 CTGGATCTTCTGCTTC-ACGTTCTCGATGGTGTC-CGAGGACTCAACCTCGAGCGTAATA 185 Query 104525 GTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || ||||| || || || || |||||||| Sbjct 184 GTCTTTCCCGTAAGGGTCTTGACGAAGATCTGCAT 150 >seq5953 Length=2772 Score = 95.1 bits (104), Expect = 3e-14 Identities = 144/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||| | || || | ||||| || || || || || Sbjct 2437 GTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCAAGCTGCTTGCCG 2378 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || ||||| || || || || ||||||||||| ||| || Sbjct 2377 GCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 2319 Query 104482 TACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | ||| || | ||| || ||||| || ||||| ||||| || || || | Sbjct 2318 CACGTTCTCGATGGTGTC-CGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTGAGGG 2260 Query 104541 TTTTTACAAATATCTGCATT 104560 | || || || ||||||||| Sbjct 2259 TCTTCACGAAGATCTGCATT 2240 >seq23417 Length=955 Score = 91.5 bits (100), Expect = 3e-13 Identities = 147/205 (72%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | ||||| || || || || || Sbjct 794 GTTGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCAAGCTGCTTGCCG 735 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || || || || || || || ||||||||||| ||| || Sbjct 734 GCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 676 Query 104482 TACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | || || | ||| || ||||| || ||||| ||||| || || || | Sbjct 675 CACGTTCTCAATCGTGTC-CGAGGACTCGACCTCAAGCGTAATGGTCTTGCCGGTGAGAG 617 Query 104541 TTTTTACAAATATCTGCATT-TTGT 104564 | || || || ||||||||| |||| Sbjct 616 TCTTCACGAAGATCTGCATTGTTGT 592 >seq17739 Length=625 Score = 91.5 bits (100), Expect = 3e-13 Identities = 147/205 (72%), Gaps = 5/205 (2%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || ||||||| || || | || || || || || || ||| Sbjct 608 GTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCGAGCTGCTTGCCA 549 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTT 104481 || || || || | ||| || || || || || || || || ||||||||||| ||| || Sbjct 548 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TT 490 Query 104482 TACATTTTCTACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTG 104540 || || || | || || | ||| || ||||| || ||||| ||||| || || || | Sbjct 489 CACGTTCTCGATCGTGTC-CGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTGAGGG 431 Query 104541 TTTTTACAAATATCTGCATT-TTGT 104564 | || || || ||||||||| |||| Sbjct 430 TCTTCACGAAGATCTGCATTGTTGT 406 >seq13648 Length=1701 Score = 91.5 bits (100), Expect = 3e-13 Identities = 138/191 (72%), Gaps = 4/191 (2%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || ||||||| || || | ||||| || || || || || || || || Sbjct 1300 TTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATG 1241 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTT-TGCTTTTACATTTTC 104490 || | ||| || || || || || || || || ||||||||||| ||| || || || || Sbjct 1240 AGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTCTGC-TTCACGTTCTC 1182 Query 104491 TACGGTATCGCTAGG-TTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAA 104549 | ||| || | ||| || ||||| || ||||| ||||| || || || || || || | Sbjct 1181 AATGGTGTC-CGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGA 1123 Query 104550 ATATCTGCATT 104560 | ||||||||| Sbjct 1122 AGATCTGCATT 1112 >seq2664 Length=7344 Score = 86.0 bits (94), Expect = 1e-11 Identities = 149/214 (70%), Gaps = 2/214 (1%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || || || | || ||||| ||||| || || ||||| | || || | ||||| Sbjct 1184 AAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTC 1243 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 || || || || || || || || || | ||| || || || || || || || || || Sbjct 1244 CTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTC 1303 Query 104467 CTGAATCTT-TGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAG 104525 ||| ||||| ||||| || || || | ||| || | || ||||| || ||||||| Sbjct 1304 CTGGATCTTCTGCTTC-ACGTTCTCGATGGTGTCCGACGACTCGACCTCGAGAGTAATAG 1362 Query 104526 TCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||||| || | || || || || || ||||| Sbjct 1363 TCTTACCCGTCAAGGTCTTGACGAAGATTTGCAT 1396 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1150708007486692