Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq941 109 5e-19 seq43583 104 2e-17 seq23417 102 7e-17 seq19541 84.2 2e-11 >seq941 Length=7582 Score = 109 bits (120), Expect = 5e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 48517 CACTAAATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTC 48576 ||| || || || ||| |||||| || |||||||| || |||| || ||||||| Sbjct 7577 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTC 7518 Query 48577 CAGCTGCTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCAT 48636 |||||||| ||| || | || | |||||||| || ||| | | ||||||||| Sbjct 7517 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 7458 Query 48637 AATTTTCTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTT 48696 || |||||||| | | | ||||| || | ||||| ||||| || ||||| || Sbjct 7457 GATCTTCTGCTTCACGTTCTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTT 7398 Query 48697 ACCGGTGAGAGTTTTCACAAAAATCTGCATCGT 48729 ||||||||||| ||||| || |||||||| || Sbjct 7397 GCCGGTGAGAGTCTTCACGAAGATCTGCATTGT 7365 >seq43583 Length=763 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGTA 48594 |||||| ||||||||||| || ||||| || ||||||| |||||||| ||| || | Sbjct 81 CTCCTTCTGAATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 140 Query 48595 AATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGATAGA 48654 || | |||||||| ||| || | || ||||||||| || |||||||| | Sbjct 141 GATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTCACGTT 200 Query 48655 CGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTTCAC 48714 | | ||||| |||| ||||| ||||| || || || ||||| || || || || || Sbjct 201 CTCAATGGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTACCCGTAAGGGTCTTGAC 260 Query 48715 AAAAATCTGCAT 48726 || |||||||| Sbjct 261 GAAGATCTGCAT 272 >seq23417 Length=955 Score = 102 bits (112), Expect = 7e-17 Identities = 146/206 (71%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTGC 48583 ||||| || |||||| || |||||||| ||||| | || ||||||| |||||| Sbjct 800 TGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTCAAGCTGC 741 Query 48584 TTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTC 48643 || ||| || | || | |||||||| || ||| | | ||||||||| ||| ||| Sbjct 740 TTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTGAATCTTC 681 Query 48644 TGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTG 48703 ||||| | | | || || || | ||||| ||| | || ||||| || |||||| Sbjct 680 TGCTTCACGTTCTCAATCGTGTCCGAGGACTCGACCTCAAGCGTAATGGTCTTGCCGGTG 621 Query 48704 AGAGTTTTCACAAAAATCTGCATCGT 48729 ||||| ||||| || |||||||| || Sbjct 620 AGAGTCTTCACGAAGATCTGCATTGT 595 >seq19541 Length=1770 Score = 84.2 bits (92), Expect = 2e-11 Identities = 139/201 (69%), Gaps = 0/201 (0%) Strand=Plus/Plus Query 48523 ATGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGTCGCTCGTCCTCCAGCTG 48582 ||| || ||| |||||| || ||||||||||| | | || ||||||||||||| Sbjct 1261 ATGGAGGGTGGACTCCTTCTGCATGTTGTAATCCGAGAGGGTGCGGCCGTCCTCCAGCTG 1320 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| | | || |||||| || || ||| | | |||||||||| | Sbjct 1321 CTTGCCGGCAAAGATGAAACGCATTTGGTCGGGCGGAATGCCTTCCTTGTCCTGGAGGCG 1380 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 ||||||||| | | | |||| || | ||| |||||| || ||||| || ||||| Sbjct 1381 CTGCTTGATGGTCTCGATGGAGTCTCCGGGGTCCATCTCGAGCGTGATGGTCTTGCCGGT 1440 Query 48703 GAGAGTTTTCACAAAAATCTG 48723 ||| || ||||| || ||||| Sbjct 1441 GAGGGTCTTCACGAAGATCTG 1461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421010933980799