Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq32341 86.0 6e-12 seq5953 86.0 6e-12 seq1090 86.0 6e-12 seq20914 84.2 2e-11 >seq32341 Length=1450 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/208 (70%), Gaps = 3/208 (1%) Strand=Plus/Plus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || ||||| || | ||| || ||| || ||| | ||||| ||||| Sbjct 1075 GTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGCGTGCGGCCGTCCTCGAGCTG 1134 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || ||||||| | | ||||| || || || || || || ||||| | || || Sbjct 1135 CTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTT 1194 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGG--TCGACGTCAATCGTGATGGTTTTTCCA 94981 | ||| ||| ||| || || |||||| || || || | |||||| || ||||| Sbjct 1195 TTGCTTCACGTTCTCGATGGTATC-GCGTGGACTCAACCTCGAGCGTGATCGTCTTTCCC 1253 Query 94982 GTAAGAGTTTTCACAAAGATCTGCATGC 95009 ||||| || || || ||||||||||||| Sbjct 1254 GTAAGGGTCTTGACGAAGATCTGCATGC 1281 >seq5953 Length=2772 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | ||| || ||| || || | ||||| Sbjct 2450 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTC 2391 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || ||| | ||||| | | ||||| || ||||| || || || ||||| | Sbjct 2390 AAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTGTCCTG 2331 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 ||| || ||| ||| ||| ||||| | | ||||| || | ||| ||||| || Sbjct 2330 AATCTTCTGCTTCACGTTCTCGATGGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTT 2271 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || ||||| ||||||||||| Sbjct 2270 GCCGGTGAGGGTCTTCACGAAGATCTGCAT 2241 >seq1090 Length=10094 Score = 86.0 bits (94), Expect = 6e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 94798 CACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTC 94857 ||||||||| | || || ||||| || | ||| || ||| || || | |||||| Sbjct 7565 CACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTC 7624 Query 94858 CAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATA 94917 ||||| || ||| | ||||| | | ||||| || || ||||| || || ||||| | Sbjct 7625 GAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTG 7684 Query 94918 AATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTT 94977 || || ||| ||| ||| ||||| | ||||| || | |||||| || || Sbjct 7685 GATCTTCTGCTTCACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTT 7744 Query 94978 TCCAGTAAGAGTTTTCACAAAGATCTGCATGC 95009 || ||||| || || || ||||||||||||| Sbjct 7745 ACCCGTAAGGGTCTTGACGAAGATCTGCATGC 7776 >seq20914 Length=1556 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 94804 GTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCCAGCTG 94863 ||| | ||| || ||||| || | ||| || ||| || ||| | ||||| ||||| Sbjct 249 GTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTG 190 Query 94864 TTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAAATTTT 94923 || || | ||||| | | ||||| || ||||||||||| || ||||| | || || Sbjct 189 CTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTT 130 Query 94924 TGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGT 94983 ||| ||| ||| ||||| | ||||| || | ||| || || || || || Sbjct 129 CTGCTTCACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTACCCGT 70 Query 94984 AAGAGTTTTCACAAAGATCTGCATGC 95009 ||| ||||| || ||||||||||||| Sbjct 69 AAGGGTTTTGACGAAGATCTGCATGC 44 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448028955251640