Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq657 159 5e-35 seq32965 154 2e-33 seq1201 150 3e-32 seq651 150 3e-32 seq10043 143 4e-30 seq10042 143 4e-30 seq11527 96.9 5e-16 >seq657 Length=4527 Score = 159 bits (176), Expect = 5e-35 Identities = 169/223 (76%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 776 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGCCGCGGT 835 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| ||| | ||| | ||| | ||| Sbjct 836 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACTCGCGGTGTGCTCAAGGTTTTC 895 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| ||| || || ||| |||||||||||| | |||||||| Sbjct 896 CTCGAGAACGTCATCCGTGACGCCGTCACCTACACCGAGCACGCTCGCAGGAAGACTGTT 955 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 || ||||||| ||||||| || | || | || ||||||| Sbjct 956 ACTGCCATGGACGTCGTCTACGCTCTCAAGAGGCAGGGCCGTA 998 >seq32965 Length=814 Score = 154 bits (170), Expect = 2e-33 Identities = 168/223 (75%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 9 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGCCGCGGT 68 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| ||| | ||| | ||| | ||| Sbjct 69 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACTCGCGGTGTGCTCAAGGTTTTC 128 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| || |||| ||| || || ||| |||||||||||| | |||||||| Sbjct 129 CTCGAGAATGTCATCCGTGACGCCGTCACCTACACCGAGCACGCTCGCAGGAAGACTGTT 188 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTA 16676 || ||||||| ||||||| || | || | || ||||||| Sbjct 189 ACTGCCATGGACGTCGTCTACGCTCTCAAGAGGCAGGGCCGTA 231 >seq1201 Length=12264 Score = 150 bits (166), Expect = 3e-32 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 9355 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGCCGCGGT 9414 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| || | || | ||| | ||| Sbjct 9415 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACCCGCGGAGTGCTCAAGGTGTTC 9474 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||||| || || || ||| || ||||||||| | ||||||||| Sbjct 9475 CTCGAGAACGTTATCCGCGACGCCGTCACCTACACTGAGCACGCTCGCAGGAAGACTGTC 9534 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || || || ||||| Sbjct 9535 ACGGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGCCG 9575 >seq651 Length=4543 Score = 150 bits (166), Expect = 3e-32 Identities = 166/221 (75%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 420 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGCCGCGGT 361 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| || | || | ||| | ||| Sbjct 360 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTC 301 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| |||||||| || || || ||| || ||||||||| | ||||||||| Sbjct 300 CTCGAGAACGTTATCCGCGACGCCGTCACCTACACTGAGCACGCTCGCAGGAAGACTGTC 241 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || ||||||| ||||||| || | || || || ||||| Sbjct 240 ACGGCCATGGACGTCGTCTACGCTCTCAAGCGCCAGGGCCG 200 >seq10043 Length=2754 Score = 143 bits (158), Expect = 4e-30 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 1829 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGCCGCGGT 1770 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| ||| | ||| | ||| | ||| Sbjct 1769 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACTCGCGGTGTGCTCAAGGTGTTC 1710 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || || ||||| | |||||||| Sbjct 1709 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACTGAACACGCCCGCAGGAAGACTGTT 1650 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| ||||||| || | || | || ||||||| | || ||||| || Sbjct 1649 ACTGCCATGGACGTCGTCTACGCTCTCAAGAGGCAGGGCCGTACCCTCTACGGTTTCGG 1591 >seq10042 Length=2718 Score = 143 bits (158), Expect = 4e-30 Identities = 175/239 (73%), Gaps = 0/239 (0%) Strand=Plus/Minus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 1526 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGCCGCGGT 1467 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTC 16573 || ||||||||| |||| || || |||| || |||| ||| | ||| | ||| | ||| Sbjct 1466 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACTCGCGGTGTGCTCAAGGTGTTC 1407 Query 16574 CTCAAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTC 16633 ||| ||| ||| |||| || || || ||| || || ||||| | |||||||| Sbjct 1406 CTCGAGAACGTCATCCGCGACGCCGTCACCTACACTGAACACGCCCGCAGGAAGACTGTT 1347 Query 16634 ACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCGTAAGATTTATGGTTTTGG 16692 || ||||||| ||||||| || | || | || ||||||| | || ||||| || Sbjct 1346 ACTGCCATGGACGTCGTCTACGCTCTCAAGAGGCAGGGCCGTACCCTCTACGGTTTCGG 1288 >seq11527 Length=960 Score = 96.9 bits (106), Expect = 5e-16 Identities = 82/101 (81%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 16454 CTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGT 16513 || || || |||||||| || ||||||||||| || ||||||||||| ||||| || ||| Sbjct 856 CTCCGCGACAACATCCAGGGTATCACCAAGCCCGCCATCCGTCGTCTTGCTCGCCGCGGT 915 Query 16514 GGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCG 16554 || ||||||||| |||| || || |||| || |||| ||| Sbjct 916 GGTGTCAAGCGTATCTCGGGCATGATCTACGAGGAGACTCG 956 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79032411346707