Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_006998.1 Length=194711 Score E Sequences producing significant alignments: (Bits) Value seq8173 147 3e-30 seq11040 120 4e-22 seq283 96.9 4e-15 >seq8173 Length=3122 Score = 147 bits (162), Expect = 3e-30 Identities = 375/563 (67%), Gaps = 16/563 (3%) Strand=Plus/Plus Query 33304 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 33363 || || || |||||||||||||||||||| | || || || |||||| || | || Sbjct 1524 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 1583 Query 33364 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAG 33423 |||||||| ||||| ||||| || ||||| || ||||| ||| || || || |||||| Sbjct 1584 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAG 1643 Query 33424 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC--------TC-CATAACCGGCGCTG 33474 || || || || || || ||| | || || | ||| || | ||| | || Sbjct 1644 ATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTC-CTT 1702 Query 33475 TCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33533 || ||||| | || ||||| ||||||||||| || || | |||| || || || Sbjct 1703 GCA--AATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCAT 1759 Query 33534 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33593 ||| ||||| | || || || | ||||||||| || || ||||| | || Sbjct 1760 GGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGA 1819 Query 33594 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33653 ||||||||||| || ||||| || || || ||||| || |||||||| || | ||||| Sbjct 1820 GTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTC 1879 Query 33654 GGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTCACT 33713 || | || ||||| | || || | |||| || || || || || || || Sbjct 1880 GGGCACTTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGCT 1939 Query 33714 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG-TTAGTTTAT 33772 ||| || || || |||| || || || || || | || ||||| | || | || | Sbjct 1940 GGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC-GTTGCTGAGCGAAG 1998 Query 33773 TCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTG 33832 ||| | || || || | ||| || || || | ||||| || || ||||| | Sbjct 1999 CCCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGG 2058 Query 33833 CCTTTTTATACATGTTCCAGATG 33855 |||| || ||||| | ||| ||| Sbjct 2059 CCTTCTTGTACATCTCCCAAATG 2081 >seq11040 Length=1541 Score = 120 bits (132), Expect = 4e-22 Identities = 334/506 (66%), Gaps = 16/506 (3%) Strand=Plus/Minus Query 33361 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAG 33420 || |||||||| ||||| ||||| || ||||| || ||||| ||| || || || ||| Sbjct 1541 AGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAG 1482 Query 33421 AAGATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC--------TCCATA-ACCGGCG 33471 ||||| || || || || || ||| | || || | ||| || | ||| | Sbjct 1481 AAGATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCC 1422 Query 33472 CTGTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTC 33530 || | ||||| | || ||||| ||||||||||| || || | |||| || || Sbjct 1421 TTGCAA---ATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTC 1366 Query 33531 TATGGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAG 33590 ||||| ||||| | || || || | ||||||||| || || ||||| | || Sbjct 1365 CATGGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAG 1306 Query 33591 ACTATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGC 33650 ||||||||||| || ||||| || || || ||||| || |||||||| || | || Sbjct 1305 CGAGTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGC 1246 Query 33651 CTCGGTAATCTGTACTTCTGTACAAAATCGTTCCGCCAAATTTTCATTCACTATTCCGTC 33710 ||||| | ||| ||||| | || || | |||| || || || || || || Sbjct 1245 CTCGGGCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATC 1186 Query 33711 ACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTT 33769 ||||| || || || |||| || || || || || | || ||||| | |||| || Sbjct 1185 GCTGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC-GTTGTTGAGCG 1127 Query 33770 TATTCCAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCT 33829 | ||| | || || || | ||| || || || | ||||| || || |||| Sbjct 1126 AAGCCCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCT 1067 Query 33830 CTGCCTTTTTATACATGTTCCAGATG 33855 | ||||| || ||||| | ||| ||| Sbjct 1066 CGGCCTTCTTGTACATCTCCCAAATG 1041 >seq283 Length=14928 Score = 96.9 bits (106), Expect = 4e-15 Identities = 99/128 (77%), Gaps = 1/128 (1%) Strand=Plus/Minus Query 33319 TGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCA 33378 |||| || || |||| |||||| || ||||||||||| | ||| |||||||| || || Sbjct 2996 TGCATCCCTTCATCTCGACTAATGAGCTCGTTGGAAAAGGCGAGGCCGGGCATGAGTCCG 2937 Query 33379 CGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCAGAAAAGAAGATTCCTTCTACTGCA 33438 ||||| || |||| ||| ||||| ||| || ||||| |||||||| || || || || Sbjct 2936 CGCTTCTTGAGCC-AAAGATGGAGCAGAAGGAGCCAGAGAAGAAGATGCCCTCGACGGCG 2878 Query 33439 GCAAAGGC 33446 ||||| || Sbjct 2877 GCAAACGC 2870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622582783674840