Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq960 298 1e-75 seq18213 192 2e-43 seq21360 123 6e-23 >seq960 Length=8959 Score = 298 bits (330), Expect = 1e-75 Identities = 636/950 (67%), Gaps = 0/950 (0%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| |||||||| || || | | ||| || || || | || ||| | || || Sbjct 7563 TTCACCCACGCCACACCGACCCTCTTCAACGCCGGCACCCCCCGCCCGCAGCTTTCGTCG 7622 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || | |||||||| || || ||||||||||||| ||||| || ||| | Sbjct 7623 TGCTTCCTCCTCACCATGAAGGAGGACTCGATCGAGGGTATCTACGACACGCTCAAGCAG 7682 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || || |||||| || ||||| || || || | |||| | || || Sbjct 7683 TGCGCCCTCATCTCCAAGTCAGCTGGCGGTATCGGCGTCGCTGCCCACCGCATCCGCGCC 7742 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||| |||||||||||||| || |||||| || || || || ||||| || Sbjct 7743 TCCAACTCGTACATTCGCGGCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGC 7802 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || | || | ||||| | |||||||||||||| || || |||||||| || || ||| Sbjct 7803 GTCTACAACGACACTGCCCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTT 7862 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || ||||||||||| || ||||| || ||||| ||| | |||||| ||| ||| Sbjct 7863 GCCATCTATCTCGAGCCGTGGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAAC 7922 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||||| || || || || || ||||| | || ||| | | |||| Sbjct 7923 CACGGCAAGGAGGAGAACCGCGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTC 7982 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGAATGTCCA 364026 || ||||||||||| ||| | || | ||||| ||||| ||||| |||| || Sbjct 7983 TTCATGAAGCGCGTCGAGTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCC 8042 Query 364027 GGTCTTTCCGATGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTATGAATCGGAG 364086 || || | || ||||| | || | || | || || || || |||| Sbjct 8043 GGCCTGTTTGACTCGTGGGGCAAGGAGTTTGAGGAGAAGTATGAGCGCTACGAGCTGGAG 8102 Query 364087 GGAAAGGCTCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCATGGATTCGCAG 364146 || || || | | || ||| |||| |||||||| ||| | || |||||| Sbjct 8103 GGCCGCGCCCGCCGGGTGGTCAAGGCCCAGGAGCTCTGGTTTGCGATCCTCGAGTCGCAG 8162 Query 364147 ATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAAGTCCAACCAG 364206 || ||||| || || ||||| ||| | ||||| || | |||||| ||||||| |||||| Sbjct 8163 ATCGAGACTGGCACGCCCTACATGCTCTACAAGGACGCCTGCAACAGCAAGTCGAACCAG 8222 Query 364207 CAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTATTGAATACACCGCT 364266 |||||||| || || || ||| | ||||| || || ||| | || | |||||| | Sbjct 8223 CAGCACCTGGGCACGATCCAGTCGTCGAACCTGTGCACGGAGGTCATCCAGTACACCTCG 8282 Query 364267 CCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGTTTGTAAAAGAT 364326 |||||||| ||||| || ||||| || |||||||| || || ||| | || Sbjct 8283 CCCGACGAAGTGGCCGTGTGCAACCTGGCCTCGATCGCCCTGCCCAAGTTCATCGTCGAC 8342 Query 364327 GGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTACTTGCAATCTCGAC 364386 || ||||| |||||| | || | |||||| | | | || || ||| || Sbjct 8343 GGCCAGTTTGATCACCAGAAGCTGTTTGACGTGGTCAAGGTCGTCACCAAGAACCTCAAC 8402 Query 364387 AAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTTCTAATATGCGTCAT 364446 ||||| ||||||| || || || || | || || ||| || || ||| || Sbjct 8403 AAGGTGATCGACATCAACTACTACCCGGTGCCCGAGGCCCGCACCTCGAACCAGCGCCAC 8462 Query 364447 CGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGATGCT 364496 ||||| || || |||| || |||||||| || ||||| || ||||| || Sbjct 8463 CGCCCCATCGGCATTGGCGTGCAGGGCCTGGCCGACGTCTTCATGATCCT 8512 >seq18213 Length=2148 Score = 192 bits (212), Expect = 2e-43 Identities = 327/473 (69%), Gaps = 1/473 (0%) Strand=Plus/Minus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 ||||| ||||||||||| || | | ||| || || || | |||||| | || || Sbjct 574 TTCACCCACGCCACGCCCACCCTCTTCAACGCCGGCACCCCCCGCCCACAGCTTTCGTCG 515 Query 363607 TGCTTTCTTCTAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAAT 363666 ||||| || || | |||||||| || || ||||||||||||| ||||| || ||| | Sbjct 514 TGCTTCCTCCTCACCATGAAGGAGGACTCGATCGAGGGTATCTACGACACGCTCAAGCAG 455 Query 363667 TGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGCA 363726 || || || || |||||| || ||||| || || || | |||| | || || Sbjct 454 TGCGCCCTCATCTCCAAGTCAGCTGGCGGTATCGGCGTCGCTGCCCACCGCATCCGCGCC 395 Query 363727 CAGAACAGTTACATTCGCGGCACAGGGGGATACTCGAATGGGCTGGTTCCCATGCTTCGT 363786 ||| |||||||||||||| || |||||| | || || || ||||| || Sbjct 394 TCCAACTCGTACATTCGCGGCACCAACGGCACCTCGAACGT-CTCGTCCCGATGCTGCGC 336 Query 363787 GTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGGAGGAAAGCGCAAAGGGGCGTTT 363846 || | || | ||||| | |||||||||||||| || || |||||||| || || ||| Sbjct 335 GTCTACAACGACACTGCCCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTT 276 Query 363847 GCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCCGGAAAAAC 363906 || || || |||||||| || ||||| || ||||| ||| | |||||| ||| ||| Sbjct 275 GCCATCTACCTCGAGCCGTGGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAAC 216 Query 363907 ACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTTCTGACCAT 363966 || || ||||| || || || || || ||||| | || ||| | | |||| Sbjct 215 CACGGCAAGGAGGAGAACCGCGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTC 156 Query 363967 TTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACGA 364019 || ||||||||||| ||| | || | ||||| ||||| ||||| |||| Sbjct 155 TTCATGAAGCGCGTCGAGTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGA 103 >seq21360 Length=1073 Score = 123 bits (136), Expect = 6e-23 Identities = 608/951 (64%), Gaps = 24/951 (3%) Strand=Plus/Plus Query 364193 GCAAGTCCAACCAGCAGCACCTTGGTACAATTCAGCAGAGCAACCTATGTACCGAGATTA 364252 ||||||| |||||||||||||| || || || ||| | ||||| || || ||| | | Sbjct 1 GCAAGTCGAACCAGCAGCACCTGGGCACGATCCAGTCGTCGAACCTGTGCACGGAGGTCA 60 Query 364253 TTGAATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGG 364312 | | |||||| | |||||||| ||||| || ||||| || |||||||| || || Sbjct 61 TCCAGTACACCTCGCCCGACGAAGTGGCCGTGTGCAACCTGGCCTCGATCGCCCTGCCCA 120 Query 364313 CGTTTGTAAAAGATGGTACTTTTGACCACCAGCATCTTTATGACGTAACCTATCATGCTA 364372 ||| | || || ||||| |||||| | || | |||||| | | | | Sbjct 121 AGTTCATCGTCGACGGCCAGTTTGATCACCAGAAGCTGTTTGACGTGGTCAAGGTCGTCA 180 Query 364373 CTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAATTCCTGAAGCCGAGCGTT 364432 | || ||| ||||||| ||||||| || || || || | || || ||| | Sbjct 181 CCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCGGTGCCCGAGGCCCGCACCT 240 Query 364433 CTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCCTCGCTGACGTTTTTATGA 364492 | || ||| || ||||| || || |||| || |||||||| || ||||| || |||| Sbjct 241 CGAACCAGCGCCACCGCCCCATCGGCATTGGCGTGCAGGGCCTGGCCGACGTCTTCATGA 300 Query 364493 TGC----TCA-AGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAAATAAGGAGATCTT 364547 | | ||| ||| | || || | || || || | || || | ||||| Sbjct 301 TCCTGCGTCACCCGTGGGA---GA-GCGAC-GAGGCCCGCGAGCTCAACCGCGCCATCTT 355 Query 364548 TGAAACAATGTATTTTGCCGCAATGACT-GCTTCGTGTGATTTGGCAAAAACCAAGGGAA 364606 ||| || || || | |||||| || | || ||| || |||| | | |||| | Sbjct 356 TGAGACCATCTACTATGCCGC-TTGCGTGGCCTCGAACGAGCTGGCCCAGGTCGAGGGCA 414 Query 364607 AGTACTCTACTTATGAGGGGTCCCCTCTTTCGCAGGGAAAATTCCAGTTTGATCTATGGA 364666 ||| || || || || || ||| |||| || | ||| || || ||| Sbjct 415 CCTACGAGACCTACCCCGGCTCGCCGGCCTCGAAGGGCAAGCTGCAGCCCGACCTCTGGG 474 Query 364667 ATGTCACGCCATCTGTCCGATGGAACTGGGATACGCTACGTTCCAACGTTAAGAAGCATG 364726 ||| || || | ||| ||| |||||| || || || ||||| || || | Sbjct 475 GCGTCGTCCCGTCGGACCGTTGGGACTGGGCCACTCTGCGCGCCAACATTGCCCGCCACG 534 Query 364727 GTACTCGCAACTCCCTCGTTACAGCGCCCATGCCCACGGCTTCTACTGCACAGATCCTCG 364786 | |||||||| || | ||||||||||| || || || || | |||||||||| Sbjct 535 GCCTCCGCAACTCGCTGCTCGTCGCGCCCATGCCGACTGCGTCGACCTCGCAGATCCTCG 594 Query 364787 GAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGGGTTCTTTCCG 364846 | |||||||||||||| || || | || | ||| | || | ||||| | || ||| Sbjct 595 GCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACGCGCCGCATCCTGGCCG 654 Query 364847 GAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGAC--CGCGGGCTGTG 364904 | || || |||| || || || |||| | || | ||| | ||||| || | Sbjct 655 GCGACTTCACGGTCGTCAACGAGCACCTGTTGCGCGAGC--TCCAGCTGCGCGGCCTCT- 711 Query 364905 GGGTGACAGCA--TGAAGAACTATATCATCGCCGC-TAATGGTTCTGTGCAGAACATTCC 364961 ||| | ||| | |||||| | || || | || || || || || ||| || || Sbjct 712 -GGTCCCCGCAGCTCAAGAACAAGCTCGTC-CAGCACAACGGCTCGGTCCAGCGCA-TCG 768 Query 364962 AGGA-TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCATGCGAA 365020 | || | || || || | ||| | ||||| || |||||||| | || ||| Sbjct 769 ACGAGATCCCTGACGACATCAAGAAGCTCTACAAGACGGTATGGGAGCTGCCCCAGCGCG 828 Query 365021 CTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTTTAACG 365080 |||| || ||||| ||||| ||| || | ||| |||||||||||| | |||| Sbjct 829 TCATCATCGACATGGCCGCCGACCGCTCGGCCTACATCGACCAGAGCCAGTCGCTCAACG 888 Query 365081 TATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACG 365131 | | |||| |||| | | |||||||| || || ||||| ||||||| Sbjct 889 TCTACATGGGCGAGCCCTCGTTTGCCAAGCTCACCTCGATGCACTTCTACG 939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1302572093296818