Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_007383.1 Length=134394 Score E Sequences producing significant alignments: (Bits) Value seq5953 95.1 1e-14 seq1090 91.5 1e-13 seq2664 86.0 5e-12 >seq5953 Length=2772 Score = 95.1 bits (104), Expect = 1e-14 Identities = 151/217 (70%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 23984 AAACAAAATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGA 24043 ||| | |||||| | || || || || | || || || | ||||| |||| ||||| Sbjct 2234 AAAAACAATGCAGATCTTCGTGAAGACCCTCACCGGCAAGACCATTACGCTCGAGGTCGA 2293 Query 24044 GGCCAACGACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCC 24103 | || |||||||||||| | || || || |||||| ||||| || ||||| ||||| Sbjct 2294 GTCCTCGGACACCATCGAGAACGTGAAGCAGAAGATTCAGGACAAGGAGGGCATCCCTCC 2353 Query 24104 CGATCAACAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGA 24163 ||| || ||| | || || | || ||||||||| || || || | | | | | | ||| Sbjct 2354 CGACCAGCAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACCCTGGCCGA 2413 Query 24164 TTATAACATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || ||||| || || || || || | || || ||| Sbjct 2414 CTACAACATCCAGAAGGAGTCCACCCTCCACTTGGTG 2450 >seq1090 Length=10094 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 ||||| | || || || || | || || || |||| || |||| |||||| | | Sbjct 7774 ATGCAGATCTTCGTCAAGACCCTTACGGGTAAGACGATCACGCTCGAGGTCGAGTCGTCC 7715 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| || ||||| || || || || Sbjct 7714 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATTCCCCCGGACCAG 7655 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| ||||| |||| | | | | | ||| || ||| Sbjct 7654 CAGCGTCTCATCTTCGCCGGCAAGCAGCTCGAGGATGGCCGTACCTTGGCCGACTACAAC 7595 Query 24171 ATTCAAAAAGAATCTACAATTCATTTAGTG 24200 || || || || || || |||| || ||| Sbjct 7594 ATCCAGAAGGAGTCCACCCTTCACTTGGTG 7565 >seq2664 Length=7344 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 23991 ATGCAAGTGTTTGTAAAAACATTAACTGGAAAATCGATTACCATCGAAGTCGAGGCCAAC 24050 |||||| | || || || || || || || || | ||||| |||| |||||| | Sbjct 1396 ATGCAAATCTTCGTCAAGACCTTGACGGGTAAGACTATTACTCTCGAGGTCGAGTCGTCG 1337 Query 24051 GACACCATCGAGCAAGTCAAACAAAAGATTACCGACAAAGAAGGCATACCTCCCGATCAA 24110 |||||||||||| | || || || ||||| ||||| || ||||| || || || || Sbjct 1336 GACACCATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAG 1277 Query 24111 CAGAGACTGATTTACGGCGGCAAGCAACTCGAAGATGACAGAAACGTCAGCGATTATAAC 24170 ||| | || || | || ||||||||| || || || | | | | | | ||| || ||| Sbjct 1276 CAGCGCCTCATCTTCGCCGGCAAGCAGCTTGAGGACGGCCGTACCCTGGCCGACTACAAC 1217 Query 24171 ATTCAAAAAGAATCTAC 24187 || || || ||||| || Sbjct 1216 ATCCAGAAGGAATCGAC 1200 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 429690780493845