Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_008168.1 Length=104710 Score E Sequences producing significant alignments: (Bits) Value seq20925 127 1e-24 seq12136 105 4e-18 seq22923 98.7 7e-16 seq19135 96.9 2e-15 seq2664 96.9 2e-15 seq32341 93.3 3e-14 seq35388 91.5 1e-13 seq43583 84.2 1e-11 >seq20925 Length=1308 Score = 127 bits (140), Expect = 1e-24 Identities = 85/95 (89%), Gaps = 5/95 (5%) Strand=Plus/Minus Query 25902 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGATAGGG-----GGTAATCTCGT 25956 ||||||||||||||||||||||||||||| | | |||||||||| || |||||||| Sbjct 757 AAGCCCGTTCCCTTGGCTGTGGTTTCGCTGGGTGGTAGATAGGGACAGTGGGAATCTCGT 698 Query 25957 TAATCCTTTCATGCGCGTCACTAATTAGATGACGA 25991 |||||| |||||||||||||||||||||||||||| Sbjct 697 TAATCCATTCATGCGCGTCACTAATTAGATGACGA 663 >seq12136 Length=7116 Score = 105 bits (116), Expect = 4e-18 Identities = 71/79 (90%), Gaps = 3/79 (4%) Strand=Plus/Minus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCGC 20006 |||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||| | Sbjct 4567 CTCTCTTTTCAAAGTCCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTCTCTC 4508 Query 20007 G---GTAATATTTAGCCTT 20022 | | ||||||||||||| Sbjct 4507 GCTTGCAATATTTAGCCTT 4489 >seq22923 Length=1109 Score = 98.7 bits (108), Expect = 7e-16 Identities = 71/80 (89%), Gaps = 4/80 (5%) Strand=Plus/Plus Query 19947 CTCTCTCTTCAAAGTTCTTTTCAACTTTCCCTCA-CGGTACTTGTTCGCTATCGGTCTCG 20005 |||||| |||||||| ||||||| |||||||||| |||||||||||||||||||||||| Sbjct 890 CTCTCTTTTCAAAGTCCTTTTCACCTTTCCCTCATCGGTACTTGTTCGCTATCGGTCTCT 949 Query 20006 CG---GTAATATTTAGCCTT 20022 || | ||||||||||||| Sbjct 950 CGCTTGCAATATTTAGCCTT 969 >seq19135 Length=1020 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | || | || ||||| |||||| || || ||||| || | | Sbjct 248 CCACCACGCAGACGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 189 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || || ||||| || ||||| || || || | |||| Sbjct 188 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGG 129 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACT 38270 | ||| || |||||| || ||||||||||| |||| || ||||| | ||||| Sbjct 128 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCTGGACTCAACC 69 Query 38271 TCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || | || || || || ||||| | ||| || ||||| ||||||||| Sbjct 68 TCGAGCGTGATCGTCTTTCCCGTAAGGGTCTTGACGAAGATCTGCATG 21 >seq2664 Length=7344 Score = 96.9 bits (106), Expect = 2e-15 Identities = 138/192 (72%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || || ||||| || | || ||| |||| || | || || ||||| || Sbjct 1206 TCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAG 1265 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || ||||| || || || | ||||| ||| || |||||| || || |||||||| ||| Sbjct 1266 ATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTC 1325 Query 38247 TGGACAGTATCTCCACTT-TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || || || | || || || || | |||||||| |||||||||||||| || || Sbjct 1326 TCGATGGTGTC-CGACGACTCGACCTCGAGAGTAATAGTCTTACCCGTCAAGGTCTTGAC 1384 Query 38306 GAATATCTGCAT 38317 ||| || ||||| Sbjct 1385 GAAGATTTGCAT 1396 >seq32341 Length=1450 Score = 93.3 bits (102), Expect = 3e-14 Identities = 160/231 (69%), Gaps = 5/231 (2%) Strand=Plus/Plus Query 38091 CCACCTCTCAAACGCAACACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGAC 38150 ||||| | || ||| | || | || ||||| |||||| || || ||||| || | | Sbjct 1052 CCACCACGCAGACGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 1111 Query 38151 AAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATCGGAGGGG 38210 | || |||| || | || || || ||||| || ||||| || || || | |||| Sbjct 1112 AGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGTCCGGGGGG 1171 Query 38211 ACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTCTGGACAGTATC---TCCACTTTCA 38267 | ||| || |||||| || ||||||||||| |||| || ||||| | || ||| Sbjct 1172 ATGCCCTCCTTGTCCTGGATCTTTTGCTTCACGTTCTCGATGGTATCGCGTGGAC--TCA 1229 Query 38268 ACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCACGAATATCTGCATG 38318 || || | || || || || ||||| | ||| || ||||| ||||||||| Sbjct 1230 ACCTCGAGCGTGATCGTCTTTCCCGTAAGGGTCTTGACGAAGATCTGCATG 1280 >seq35388 Length=1012 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 38127 TCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTCTAATTGTTTTCCGGCAAAT 38186 ||||| || || ||||| || | || ||| |||| || | || || ||||| || Sbjct 217 TCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAA 158 Query 38187 ATTAGGCGTTGTTGATCGGAGGGGACGCCTTCTTTGTCCATAATTTTTTGCTTCACATTC 38246 || ||||| || || || | ||| | || || || ||| ||| || |||||||| ||| Sbjct 157 ATGAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGAATCTTCTGCTTCACGTTC 98 Query 38247 TGGACAGTATCTCCACTT-TCAACTTCTAATGTAATAGTTTTACCCGTCAAGGTTTTCAC 38305 | || || || | || || || || | |||||||| |||||||||||||| || || Sbjct 97 TCGATGGTGTC-CGACGACTCGACCTCGAGAGTAATAGTCTTACCCGTCAAGGTCTTGAC 39 Query 38306 GAATATCTGCAT 38317 ||| |||||||| Sbjct 38 GAAGATCTGCAT 27 >seq43583 Length=763 Score = 84.2 bits (92), Expect = 1e-11 Identities = 146/211 (69%), Gaps = 1/211 (0%) Strand=Plus/Plus Query 38108 CACCAAATGAAGAGTGCTCTCCTTTTGAATATTGTAATCAGACAAAACACGTTCGTCGTC 38167 |||||| || || ||| |||||| || || ||||| |||| | || |||| || Sbjct 291 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCGTCCTC 350 Query 38168 TAATTGTTTTCCGGCAAATATTAGGCGTTGTTGATC-GGAGGGGACGCCTTCTTTGTCCA 38226 | || || ||||| || || ||||| || || || || ||||| ||| || |||||| Sbjct 351 AAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGGATGCCCTCCTTGTCCT 410 Query 38227 TAATTTTTTGCTTCACATTCTGGACAGTATCTCCACTTTCAACTTCTAATGTAATAGTTT 38286 || ||||||||||| |||| | || || || || || | ||||| || | Sbjct 411 GGATCTTTTGCTTCACGTTCTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCT 470 Query 38287 TACCCGTCAAGGTTTTCACGAATATCTGCAT 38317 | || || | ||| |||||||| |||||||| Sbjct 471 TGCCGGTGAGGGTCTTCACGAAGATCTGCAT 501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 334756158572969