Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_008187.1 Length=191100 Score E Sequences producing significant alignments: (Bits) Value seq46277 98.7 1e-15 seq16840 98.7 1e-15 seq480 98.7 1e-15 seq156 96.9 4e-15 seq18050 95.1 1e-14 seq18049 95.1 1e-14 seq741 95.1 1e-14 seq30995 93.3 5e-14 seq26212 89.7 6e-13 seq2171 89.7 6e-13 seq28936 82.4 9e-11 >seq46277 Length=1086 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || |||||||| ||||| || ||||| || |||||||| | || ||||| ||| || Sbjct 125 TTCATCGGACCGACCTACTACCAGCGACTGAAGCACATGGTGGATGATAAGATCCACTCG 184 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520 || ||| ||| | ||| || ||| || |||||| ||||| |||| | Sbjct 185 CGTGCGCGCGGCCCCGTGCAGATCCTCACCCGGCAGCCCGTAGAGGGTCGTTCGCGTGAT 244 Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580 ||||| || || || ||||||||||| |||||||| | |||||||| |||| Sbjct 245 GGTGGTCTTCGATTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCTGCCCAG 304 Query 15581 TTCCTCAACGAGCG 15594 |||||||| ||||| Sbjct 305 TTCCTCAAGGAGCG 318 >seq16840 Length=1257 Score = 98.7 bits (108), Expect = 1e-15 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 15401 TTTATGGGACCGACGTACTATCACCGACTCAAACACATGGTAAAGGACAAGATGCACGCG 15460 || || |||||||| ||||| || ||||| || |||||||| | || ||||| ||| || Sbjct 1136 TTCATCGGACCGACCTACTACCAGCGACTGAAGCACATGGTGGATGATAAGATCCACTCG 1077 Query 15461 CGATCGCACGGACAGGTGACGACGCTCCATCGCCAGCCCAACTGCGGTCGATCGCAAGGC 15520 || ||| ||| | ||| || ||| || |||||| ||||| |||| | Sbjct 1076 CGTGCGCGCGGCCCCGTGCAGATCCTCACCCGGCAGCCCGTAGAGGGTCGTTCGCGTGAT 1017 Query 15521 GGTGGCCTCCGCTTTGGAGAGATGGAAAAGGACTGCATTCTGGTGCACGGCGCCACCCAA 15580 ||||| || || || ||||||||||| |||||||| | |||||||| |||| Sbjct 1016 GGTGGTCTTCGATTCGGAGAGATGGAGCGCGACTGCATGATCTCCCACGGCGCTGCCCAG 957 Query 15581 TTCCTCAACGAGCG 15594 |||||||| ||||| Sbjct 956 TTCCTCAAGGAGCG 943 >seq480 Length=17280 Score = 98.7 bits (108), Expect = 1e-15 Identities = 135/186 (73%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 137897 TCAGCTCTTTCAGCTCGGCAATGGCCTCGTACGACTGCGGCACGTGAATGTTCATCTCGT 137956 ||||||| ||| |||||| |||| || || ||||||||||| |||||||| |||| Sbjct 3446 TCAGCTCGATCACCTCGGCCCTGGCACCGGGCGTTTGCGGCACGTGCATGTTCATTTCGT 3505 Query 137957 CGCCGTCAAAGTCGCAGTTGAAGGGCTTCGTTATGGCCAGGTTGATTTTGAGCGTCTTGA 138016 | |||||||| ||| |||| ||||| |||| | | ||||||| | || ||| || Sbjct 3506 CTCCGTCAAAATCGGCGTTGTAGGGCGTCGTGACGCAGAGGTTGAGTCGGAAGGTC--GA 3563 Query 138017 CTGGTTTGATGACC---ACCTTAAAGGCCATCATGGACGCCTTGTGCAGCGTCGGTTGCC 138073 | | |||||| || | | ||||||| ||| ||||||||||| ||| |||| Sbjct 3564 GTAG-GGCATGACCTTGACTCGATGGCCCATCATCGACATCTTGTGCAGCGACGGCTGCC 3622 Query 138074 GGTTGA 138079 |||||| Sbjct 3623 GGTTGA 3628 >seq156 Length=7294 Score = 96.9 bits (106), Expect = 4e-15 Identities = 115/151 (76%), Gaps = 4/151 (3%) Strand=Plus/Plus Query 15050 CCCGAGATTGGCGACAAGTTTTGCTCTGGT-ATGGCGCAAAAGGGCA-CGTGCGGCATGA 15107 |||| |||||||||||||||| || | | ||| ||||||||| | || ||| | Sbjct 5317 CCCGTGATTGGCGACAAGTTTGCGTCGCGACACGGC-CAAAAGGGCGTCATGTCGCA-GC 5374 Query 15108 TTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCA 15167 | | || ||||| |||||||||| | || ||| |||||| |||||||| | ||||||| Sbjct 5375 TATGGCCGCAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCATCA 5434 Query 15168 ACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 |||| || | ||||||| ||||||||||| Sbjct 5435 ACCCGCACGCCTTCCCGTCGCGCATGACCAT 5465 >seq18050 Length=635 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 126224 ACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGT 126283 |||| ||||||||||| ||| | || | | | |||| ||||||| ||| |||||| Sbjct 534 ACCGTGTGCCAAACTGGCCGGCGGGGAAGAGGAGCGGCACGTTGTTGGATCCAGCAAAGT 475 Query 126284 CCTGCGCAAACTTGACAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCT 126343 ||| || | | ||| |||||| | || ||||||||| | |||| | |||| Sbjct 474 TCTGGGCCATGTGGACGATGGTCGAGTGGAGCGAGGCCTCGCCGTGGTGGTAGGCCGTCT 415 Query 126344 GCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGAT 126380 ||||||||||||||||| ||||||||| ||||| || Sbjct 414 GCTCGGCCACGTAGCCGGCCAGCTGCGCGACCTTCAT 378 >seq18049 Length=1657 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Minus Query 126224 ACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGT 126283 |||| ||||||||||| ||| | || | | | |||| ||||||| ||| |||||| Sbjct 1009 ACCGTGTGCCAAACTGGCCGGCGGGGAAGAGGAGCGGCACGTTGTTGGATCCAGCAAAGT 950 Query 126284 CCTGCGCAAACTTGACAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCT 126343 ||| || | | ||| |||||| | || ||||||||| | |||| | |||| Sbjct 949 TCTGGGCCATGTGGACGATGGTCGAGTGGAGCGAGGCCTCGCCGTGGTGGTAGGCCGTCT 890 Query 126344 GCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGAT 126380 ||||||||||||||||| ||||||||| ||||| || Sbjct 889 GCTCGGCCACGTAGCCGGCCAGCTGCGCGACCTTCAT 853 >seq741 Length=4401 Score = 95.1 bits (104), Expect = 1e-14 Identities = 115/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 126224 ACCGCGTGCCAAACTGACCGTCCGGCTCCAACAACTGCACATTGTTGGCTCCCACAAAGT 126283 |||| ||||||||||| ||| | || | | | |||| ||||||| ||| |||||| Sbjct 3087 ACCGTGTGCCAAACTGGCCGGCGGGGAAGAGGAGCGGCACGTTGTTGGATCCGGCAAAGT 3146 Query 126284 CCTGCGCAAACTTGACAATGGTCTCGCACAGGTTCTGCTCGCCGTGCTTGTAGTCGGTCT 126343 ||| || | | ||| |||||| | || ||||||||| | |||| | |||| Sbjct 3147 TCTGGGCCATGTGGACGATGGTCGAGTGGAGCGAGGCCTCGCCGTGGTGGTAGGCCGTCT 3206 Query 126344 GCTCGGCCACGTAGCCGCTCAGCTGCGCAACCTTGAT 126380 ||||||||||||||||| ||||||||| ||||| || Sbjct 3207 GCTCGGCCACGTAGCCGGCCAGCTGCGCGACCTTCAT 3243 >seq30995 Length=687 Score = 93.3 bits (102), Expect = 5e-14 Identities = 134/186 (72%), Gaps = 6/186 (3%) Strand=Plus/Plus Query 137897 TCAGCTCTTTCAGCTCGGCAATGGCCTCGTACGACTGCGGCACGTGAATGTTCATCTCGT 137956 ||||||| ||| |||||| |||| || || ||||||||||| |||||||| |||| Sbjct 195 TCAGCTCGATCACCTCGGCCCTGGCACCGGGCGTTTGCGGCACGTGCATGTTCATTTCGT 254 Query 137957 CGCCGTCAAAGTCGCAGTTGAAGGGCTTCGTTATGGCCAGGTTGATTTTGAGCGTCTTGA 138016 | ||||| || ||| |||| ||||| |||| | | ||||||| | || ||| || Sbjct 255 CTCCGTCGAAATCGGCGTTGTAGGGCGTCGTGACGCAGAGGTTGAGTCGGAAGGTC--GA 312 Query 138017 CTGGTTTGATGACC---ACCTTAAAGGCCATCATGGACGCCTTGTGCAGCGTCGGTTGCC 138073 | | |||||| || | | ||||||| ||| ||||||||||| ||| |||| Sbjct 313 GTAG-GGCATGACCTTGACTCGATGGCCCATCATCGACATCTTGTGCAGCGACGGCTGCC 371 Query 138074 GGTTGA 138079 |||||| Sbjct 372 GGTTGA 377 >seq26212 Length=1016 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 15042 TGCGCACGCCCGAGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCG 15101 |||| |||||| | || ||||||||||| | || | | || ||||||||| | Sbjct 745 TGCGGACGCCCCAAATCGGCGACAAGTTCAGTTCGCGCCACGGACAGAAGGGCACGGTGG 804 Query 15102 GCATGATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTA 15161 |||| || | || ||| || ||||||||||| | | ||||| || |||||||| | Sbjct 805 GCATCATGTACCGCCAAGAGGACATGCCCTTCAACATCGAGGGCATCACCCCCGACATCA 864 Query 15162 TCATCAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 || ||||||| || |||||| ||||| |||||||| Sbjct 865 TCGTCAACCCGCACGCCATCCCCTCCCGTATGACCAT 901 >seq2171 Length=1648 Score = 89.7 bits (98), Expect = 6e-13 Identities = 114/157 (73%), Gaps = 0/157 (0%) Strand=Plus/Plus Query 15042 TGCGCACGCCCGAGATTGGCGACAAGTTTTGCTCTGGTATGGCGCAAAAGGGCACGTGCG 15101 |||| |||||| | || ||||||||||| | || | | || ||||||||| | Sbjct 1007 TGCGGACGCCCCAAATCGGCGACAAGTTCAGTTCGCGCCACGGACAGAAGGGCACGGTGG 1066 Query 15102 GCATGATTTTCCCCCAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTA 15161 |||| || | || ||| || ||||||||||| | | ||||| || |||||||| | Sbjct 1067 GCATCATGTACCGCCAAGAGGACATGCCCTTCAACATCGAGGGCATCACCCCCGACATCA 1126 Query 15162 TCATCAACCCCAACTGCATCCCGTCCCGCATGACCAT 15198 || ||||||| || |||||| ||||| |||||||| Sbjct 1127 TCGTCAACCCGCACGCCATCCCCTCCCGTATGACCAT 1163 >seq28936 Length=1618 Score = 82.4 bits (90), Expect = 9e-11 Identities = 68/83 (82%), Gaps = 0/83 (0%) Strand=Plus/Plus Query 15116 CAGGAAGACATGCCCTTTACCGCGTCAGGCATGACGCCCGACATTATCATCAACCCCAAC 15175 ||||| |||||||||| | || ||| |||||| |||||||| | ||||||||||| || Sbjct 3 CAGGAGAACATGCCCTTCAGCGAGTCGGGCATGTCGCCCGACGTCATCATCAACCCGCAC 62 Query 15176 TGCATCCCGTCCCGCATGACCAT 15198 | ||||||| ||||||||||| Sbjct 63 GCCTTCCCGTCGCGCATGACCAT 85 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 611034343322400