Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_008291.1 Length=198050 Score E Sequences producing significant alignments: (Bits) Value seq8173 123 3e-23 seq11040 105 8e-18 seq283 86.0 8e-12 >seq8173 Length=3122 Score = 123 bits (136), Expect = 3e-23 Identities = 372/564 (66%), Gaps = 18/564 (3%) Strand=Plus/Plus Query 32661 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 32720 || || || |||||||| ||||||||||| | || || | |||||| || | || Sbjct 1524 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 1583 Query 32721 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 32779 |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || ||||| Sbjct 1584 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 1642 Query 32780 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC--------TC-CATAACCGGCGCT 32830 || || || || || || ||| | || || | ||| || | ||| | || Sbjct 1643 GATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTC-CT 1701 Query 32831 GTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 32889 || ||||| | || ||||| ||||||||||| || || | |||| ||||| | Sbjct 1702 TGCA--AATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCA 1758 Query 32890 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 32949 | || ||||| | || || || | ||||||||| || || || || | || Sbjct 1759 TGGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCG 1818 Query 32950 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAGCCT 33009 ||||||||||| || ||||| || || || || || || ||||||||||| | |||| Sbjct 1819 AGTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCT 1878 Query 33010 CGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 33069 ||| | || ||||| | || || | || | || || || || || || | Sbjct 1879 CGGGCACTTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGC 1938 Query 33070 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG-TTAGTTTA 33128 |||| || || || |||| || || || || || | || ||||| | || | || | Sbjct 1939 TGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC-GTTGCTGAGCGAA 1997 Query 33129 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 33188 ||| | || || || | ||| || || || | ||||| || || ||||| Sbjct 1998 GCCCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCG 2057 Query 33189 GCCTTTTTATACATATTCCAGATG 33212 ||||| || ||||| | ||| ||| Sbjct 2058 GCCTTCTTGTACATCTCCCAAATG 2081 >seq11040 Length=1541 Score = 105 bits (116), Expect = 8e-18 Identities = 333/507 (66%), Gaps = 18/507 (4%) Strand=Plus/Minus Query 32718 AGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAA 32776 || |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || || Sbjct 1541 AGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAA 1483 Query 32777 GAAAATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTC--------TCCATA-ACCGGC 32827 ||| || || || || || || ||| | || || | ||| || | ||| | Sbjct 1482 GAAGATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTC 1423 Query 32828 GCTGTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCT 32886 || | ||||| | || ||||| ||||||||||| || || | |||| |||| Sbjct 1422 CTTGCAA---ATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCT 1367 Query 32887 CTATAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAA 32946 | || || ||||| | || || || | ||||||||| || || || || | | Sbjct 1366 CCATGGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGA 1307 Query 32947 GACTATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAGCATCTAG 33006 | ||||||||||| || ||||| || || || || || || ||||||||||| | | Sbjct 1306 GCGAGTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCG 1247 Query 33007 CCTCGGTAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGT 33066 |||||| | ||| ||||| | || || | || | || || || || || | Sbjct 1246 CCTCGGGCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCAT 1187 Query 33067 CACTGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGT 33125 | ||||| || || || |||| || || || || || | || ||||| | |||| || Sbjct 1186 CGCTGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC-GTTGTTGAGC 1128 Query 33126 TTATTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCC 33185 | ||| | || || || | ||| || || || | ||||| || || ||| Sbjct 1127 GAAGCCCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCC 1068 Query 33186 TCTGCCTTTTTATACATATTCCAGATG 33212 || ||||| || ||||| | ||| ||| Sbjct 1067 TCGGCCTTCTTGTACATCTCCCAAATG 1041 >seq283 Length=14928 Score = 86.0 bits (94), Expect = 8e-12 Identities = 95/123 (77%), Gaps = 3/123 (2%) Strand=Plus/Minus Query 32682 CCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGTCCGGGCATTAGGCCACGCTTT 32741 || || |||| |||||| | ||||||||||| | ||| |||||||| || || ||||| Sbjct 2990 CCTTCATCTCGACTAATGAGCTCGTTGGAAAAGGCGAGGCCGGGCATGAGTCCGCGCTTC 2931 Query 32742 TTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAAAATTCCTTCTACTGCCGCAAA 32800 || |||| ||| ||||| ||| || || ||||| ||||| || || || || || ||||| Sbjct 2930 TTGAGCC-AAAGATGGA-GCAGAAGGAGCCAGAGAAGAAGATGCCCTCGACGGCGGCAAA 2873 Query 32801 GGC 32803 || Sbjct 2872 CGC 2870 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 633261333200400