Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_008293.1 Length=135454 Score E Sequences producing significant alignments: (Bits) Value seq13648 105 6e-18 seq5953 100 2e-16 >seq13648 Length=1701 Score = 105 bits (116), Expect = 6e-18 Identities = 145/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || |||||| |||| || || |||| || |||| || ||||| || Sbjct 1343 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATTACGCTCGAGGTCGAGTCCTCG 1402 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| || ||| ||||||| || ||| ||||| || || || || || ||||| Sbjct 1403 GACACCATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 1462 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||| || ||| ||| ||||| Sbjct 1463 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCCGACTACAAC 1522 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 1523 ATCCAGAAGGAGTCGACTCTCCA 1545 >seq5953 Length=2772 Score = 100 bits (110), Expect = 2e-16 Identities = 144/203 (71%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 24999 ATGCAAATATTTGTAAAGACTTTGACCGGTAAATCCATCACAGTCGAAGTGGAGTCGTCT 25058 ||||| || || || ||||| | || ||||| | ||||| |||| || |||||| Sbjct 2469 ATGCAGATCTTCGTCAAGACCCTTACGGGTAAGACGATCACGCTCGAGGTCGAGTCGAGC 2528 Query 25059 GACACTATCGAGTCACTGAAGCAAAAAATCACTGACAAAGAAGGGATTCCACCTGACCAA 25118 ||||| |||||| ||||||| || ||| ||||| || || || || || ||||| Sbjct 2529 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 2588 Query 25119 CAGCGGATTATTTTTGCCGGCAAACAATTAGAAGATGATCGCACTGTGGGCGATTACAAT 25178 ||||| | || ||||||||||| || | || || | ||| || ||| ||| ||||| Sbjct 2589 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCCGACTACAAC 2648 Query 25179 ATTCAAAAAGAATCCACGCTACA 25201 || || || || || || || || Sbjct 2649 ATCCAGAAGGAGTCGACTCTCCA 2671 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433080845823185