Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq1090 120 3e-22 seq2350 109 5e-19 seq10788 105 6e-18 seq43583 100 2e-16 seq20914 100 2e-16 seq11020 100 2e-16 seq2664 96.9 3e-15 seq19930 87.8 2e-12 >seq1090 Length=10094 Score = 120 bits (132), Expect = 3e-22 Identities = 165/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || || || | || || || || || |||||||| ||| Sbjct 7545 ATACCGCCACGGAGGCGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 7604 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || ||||| ||| || || || || || ||| ||||||||||||| |||||||| Sbjct 7605 GCCAAGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGG 7664 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 |||||||| || ||||| ||||| || || | | || | |||||||| || ||| Sbjct 7665 GGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCGGACGACTCG 7724 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | ||| || || || || || || || || ||||||||| Sbjct 7725 ACCTCGAGCGTGATCGTCTTACCCGTAAGGGTCTTGACGAAGATCTGCATG 7775 Score = 107 bits (118), Expect = 2e-18 Identities = 142/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || | ||||| ||| || || || || || Sbjct 7350 GTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCGAGCTGCTTGCCG 7409 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| || ||||| || ||||| ||||| || || Sbjct 7410 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 7469 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||| | ||| ||||| || | || | || |||||||||||||| Sbjct 7470 ACGTTCTCGATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTC 7529 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 7530 TTGACGAAGATCTGCAT 7546 >seq2350 Length=2056 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 || |||||||| || | | || || || | || || || || || |||||||| || Sbjct 63 ATGCCGCCACGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 122 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | ||||| ||| || || || || |||||| ||||||||||||| ||||| || Sbjct 123 GCGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGC 182 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || ||||| || ||||| ||||| || || | | |||| |||||| | ||| ||| Sbjct 183 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCAATGGTGTCCGAGGACTCG 242 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | || | || |||||||| || || || || || |||||||| Sbjct 243 ACCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 292 >seq10788 Length=3043 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||||||||| || | | || || || | || || || || || |||||||| ||| Sbjct 2277 ATACCGCCACGCAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCG 2336 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || ||| || || || || || || || ||||||| ||||| |||||||| Sbjct 2337 GCCAGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGG 2396 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || || || ||||| |||||| || || | | |||| |||||||| || ||| Sbjct 2397 GGGATACCCTCCTTGTCCTGAATCTTCTGCTTCACGTTCTCAATGGTGTCGGACGACTCG 2456 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 114383 || || | || | ||| || || || || || || || || ||||||||| Sbjct 2457 ACCTCGAGCGTGATCGTCTTACCCGTAAGGGTCTTGACGAAGATCTGCATG 2507 >seq43583 Length=763 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || ||||||||||| ||| || ||||| || || || || || || Sbjct 76 GTCGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTGCCG 135 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| |||||||| || || || || ||||| ||||| || || Sbjct 136 GCGAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTCTGCTTC 195 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| |||||||| || ||||| || | || | ||| || || || || || Sbjct 196 ACGTTCTCAATGGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTACCCGTAAGGGTC 255 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 256 TTGACGAAGATCTGCATG 273 >seq20914 Length=1556 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| ||| || || || || || || || || ||| Sbjct 242 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCCGTCCTCGAGCTGCTTGCCA 183 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||| ||||| |||||||||||||| || || ||||| ||||| || || Sbjct 182 GCGAAGATGAGGCGCTGCTGGTCCGGAGGAATACCCTCCTTGTCCTGGATCTTCTGCTTC 123 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| || ||||| || | || | ||| || || || || ||| Sbjct 122 ACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGCGTAATCGTCTTACCCGTAAGGGTT 63 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 62 TTGACGAAGATCTGCATG 45 >seq11020 Length=1763 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || | ||||| || || || || || ||| Sbjct 291 GTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCA 232 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| |||| || ||||| |||||||| || ||||| || ||||| ||||| || || Sbjct 231 GCGAAGATAAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 172 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | ||||||| | || || || || | || | || |||||||||||||| Sbjct 171 ACGTTCTCGATGGTGTCGCTCGACTCAACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTC 112 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 111 TTGACGAAGATCTGCATG 94 >seq2664 Length=7344 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || |||||||| || | ||||| ||| || || || || || Sbjct 1428 GTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCGAGCTGCTTGCCG 1487 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| ||||| || || ||||| ||||| || || Sbjct 1488 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTCTGCTTG 1547 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | || ||||| || | ||| | || ||||| || || || Sbjct 1548 ACGTTCTCAATAGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTC 1607 Query 114366 TTTACAAAAATCTGCATG 114383 || || || || |||||| Sbjct 1608 TTGACGAAGATTTGCATG 1625 >seq19930 Length=1350 Score = 87.8 bits (96), Expect = 2e-12 Identities = 138/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 || || || || || |||||||| || | ||||| || || || || || || Sbjct 346 GTCGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 287 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 ||| ||||||||||||| |||||||| |||||||| || ||||| ||||| || || Sbjct 286 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTC 227 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | || | |||||| | ||| || || || | || | || || || || || || Sbjct 226 ACGTTCTCGATGGTGTCCGAGGACTCAACCTCGAGCGTAATAGTCTTTCCCGTAAGGGTC 167 Query 114366 TTTACAAAAATCTGCATG 114383 || || || ||||||||| Sbjct 166 TTGACGAAGATCTGCATG 149 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419894770961988