Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_009899.1 Length=344691 Score E Sequences producing significant alignments: (Bits) Value seq8173 122 2e-22 seq34906 120 7e-22 seq741 84.2 5e-11 >seq8173 Length=3122 Score = 122 bits (134), Expect = 2e-22 Identities = 284/425 (67%), Gaps = 4/425 (1%) Strand=Plus/Minus Query 243295 GAGCGTCTCGTCGCCTGGGTGTGCGTTGAAGGTATTCTGTTTTCCGGGAGTTTCTGCGCC 243354 ||||||||| ||| || | || || || || | || ||||| ||||||| || Sbjct 1678 GAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTTTCTGCTCC 1619 Query 243355 ATCTTTTGGCTGCGGAACAAAGGTGTGATGCCTGGCCTCGGTCTGTCTAACGAGTTCATC 243414 ||||| ||||| ||| || ||||||| || || | | |||||| | ||| Sbjct 1618 ATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACGAGCTTATC 1559 Query 243415 AGTCGCGACGAGGGCCTTCACCAACAGTTCGGTGAGCTTATGTATTCAAAGCTCCAGAAC 243474 || ||||||||||| || ||| | || | | || | || | ||| ||| Sbjct 1558 AGCCGCGACGAGGGTCTGCACTGCGACTTTGCTTGCCTCCTCTACGGCATGCTGGTCAAC 1499 Query 243475 AAGCTACCATTCGAAACGGTCAAACAAATCATCACAGAAGCAGTTGAAAACGAAAAGGAA 243534 |||| | ||| | ||| || ||| || || || || || | ||| ||||| Sbjct 1498 AAGCCCTCGACCGACGTGCCCAAGCAGATCGTCCTTGAGGCTGTCGAGATCGAGAAGGAG 1439 Query 243535 TTCATTTGCGA--CGCTATTCCATGCCGGCTTATTGGCATGAACTCTGAACTCATGGGAC 243592 ||| | || |||| || || | ||||||||||||||| | | |||||| | | Sbjct 1438 TTCGTCACGGAATCGCTGC-CCGTGGCT-CTTATTGGCATGAACGCCAACCTCATGTGCC 1381 Query 243593 AGTACATCGAATTCGTAGCCGACCGCATTTTCATCGCGCTTGGTTATGAGAAAGTGTACA 243652 |||||||||| ||||| |||||||| || || |||| || || | ||| || |||| Sbjct 1380 AGTACATCGAGTTCGTCGCCGACCGGCTTCTCGTCGCTCTCGGCTGTGACAAGCACTACA 1321 Query 243653 ACTCCAAGAACCCCTTTGCCTTTATGGAGCTCATTTCGCTTCAAGGGAAAACTAACTTCT 243712 |||| ||||| || | | |||||||| ||||||||| |||| || || ||||||| Sbjct 1320 ACTCATCTAACCCGTTCCCGTGGATGGAGCTTATTTCGCTTGAAGGCAAGACCAACTTCT 1261 Query 243713 TCGAA 243717 ||||| Sbjct 1260 TCGAA 1256 >seq34906 Length=1558 Score = 120 bits (132), Expect = 7e-22 Identities = 120/156 (77%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 243562 CTTATTGGCATGAACTCTGAACTCATGGGACAGTACATCGAATTCGTAGCCGACCGCATT 243621 ||||||||||||||| | | |||||| | ||||||||||| ||||| |||||||| || Sbjct 169 CTTATTGGCATGAACGCCAACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGGCTT 228 Query 243622 TTCATCGCGCTTGGTTATGAGAAAGTGTACAACTCCAAGAACCCCTTTGCCTTTATGGAG 243681 || |||| || || | ||| || |||||||| ||||| || | | |||||| Sbjct 229 CTCGTCGCTCTCGGCTGTGACAAGCACTACAACTCATCCAACCCGTTCCCGTGGATGGAG 288 Query 243682 CTCATTTCGCTTCAAGGGAAAACTAACTTCTTCGAA 243717 || ||||||||| |||| || || |||||||||||| Sbjct 289 CTTATTTCGCTTGAAGGCAAGACCAACTTCTTCGAA 324 >seq741 Length=4401 Score = 84.2 bits (92), Expect = 5e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 297520 GTTATTGCTTCCGACATAATCCTGTGCAAGGTTCACGATGGTCCCTTGCAGAGATGCTTC 297579 ||| ||| |||| || | | ||| || | || ||||||||| || || || || || Sbjct 3127 GTTGTTGGATCCGGCAAAGTTCTGGGCCATGTGGACGATGGTCGAGTGGAGCGAGGCCTC 3186 Query 297580 GCCATGGTGATAGGCGCTATGCTCTGCAACGTAACCGCTGAACTGTGCAACCTTCACGTC 297639 ||| ||||| ||||| | ||||| || ||||| ||| | ||| || ||||||| || Sbjct 3187 GCCGTGGTGGTAGGCCGTCTGCTCGGCCACGTAGCCGGCCAGCTGCGCGACCTTCATCTC 3246 Query 297640 GGTCGT-CAAATTGCGCTTGAAAGCTGAATATATCACTTTCCGTTGAGAAGGTTTGAAAC 297698 | ||| || || |||||||| | || | || || || || || |||| | Sbjct 3247 GC-CGTGCAGCTTCCGCTTGAAGCACGCGTAAAGGACCTTGCGCTGGCCCGGCTTGAGGC 3305 Query 297699 CATCAACGACCGACGGAATGCTTCG 297723 |||| ||||||||||||||||| || Sbjct 3306 CATCGACGACCGACGGAATGCTGCG 3330 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1102218699710650