Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq960 286 4e-72 seq18213 206 3e-48 seq2671 132 6e-26 seq21360 100 3e-16 seq283 95.1 1e-14 seq8173 91.5 2e-13 >seq960 Length=8959 Score = 286 bits (316), Expect = 4e-72 Identities = 941/1443 (65%), Gaps = 41/1443 (3%) Strand=Plus/Minus Query 113894 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 113953 || |||| ||||| || || || || || ||| |||| | | ||||| |||||| Sbjct 8890 AGGTGCTCGTTGACGACGGTGAAGTCGCCGGCAAGGATGCGGCGCGTGTAGATGTTGGTC 8831 Query 113954 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATG 114013 ||||| |||||||||||||| ||||| || | ||| || | ||| ||||| || |||||| Sbjct 8830 GTGTAGGGCTCAAAGCACTCGTTGTTGCCGAGGATCTGCGAGGTCGAGGCAGTCGGCATG 8771 Query 114014 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCC 114073 || || | ||| || ||| ||||| || | |||| | || | | || Sbjct 8770 GGCGCGACGAGCAGCGAGTTGCGGAGGCCGTGGCGGGCAATGTTGGCGCGCAGAGTGGCC 8711 Query 114074 CAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 114131 ||||| | | | | | | | || ||| | || || || | || | | Sbjct 8710 CAGTCCCAACGGTCCGACGGGACGACGCC--CCAGAGGTCGGGTTGCAGCTTGCCCTTCG 8653 Query 114132 AGGCTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCG---GAGC 114188 |||| ||||| || | |||||||| | |||||| |||| |||| ||| ||| Sbjct 8652 AGGCCGGCGAGCCGGGGTAGGTCTCGTAGGTGCCCTCGACCTGGGCCAGCTCGTTCGAG- 8594 Query 114189 TCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCA-TTCATTGCCTTGGCC 114247 ||| || || || | || || |||||||| ||| | || || | | |||| Sbjct 8593 --GCCACGCAAGCGGCATAGTAGATGGTCTCAAAGATG-GCGCGGTTGAGCTCGCGGGCC 8537 Query 114248 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 114307 |||||| || ||| | | || | || || || || || || || || || || Sbjct 8536 TCGTCGCTCTCCCACGGGTGGCGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACGCCA 8477 Query 114308 AGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTC---CACGGGATAAAAA 114364 | ||| || ||||| || | | || || | || || ||| ||| || || | Sbjct 8476 ATGCCGATGGGGCGGTGGCGCTGGTTCGAGGTGCGGGC---CTCGGGCACCGGGTAGTAG 8420 Query 114365 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 114424 || | ||||| ||| | || || || |||||||| ||||| | ||| ||||| Sbjct 8419 TTGATGTCGATCACCTTGTTGAGGTTCTTGGTGACGACCTTGACCACGTCAAACAGCTTC 8360 Query 114425 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 114484 | || |||||| ||| ||| | ||| |||| || |||||||| || ||||| Sbjct 8359 TGGTGATCAAA-CTGGCCGTCGA--CGATGA---ACTTGGGCAGGGCGATCGAGGCCAGG 8306 Query 114485 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAA 114544 || ||||| | || || ||||||| || | ||||| |||| || || Sbjct 8305 TTGCACACGGCCACTTCGTCGGGCGAGGTGTACTGGATGACCTCCGTGCACAGGTTCGAC 8246 Query 114545 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 114604 || || ||||||| || || || || ||||| |||| || || |||||||| ||| Sbjct 8245 GACTGGATCGTGCCCAGGTGCTGCTGGTTCGACTTGCTGTTGCAGGCGTCCTTGTAGAGC 8186 Query 114605 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATCGGCGGC- 114663 ||||| ||||| || ||||| | || |||| ||| || || ||||| || ||| Sbjct 8185 ATGTAGGGCGTGCCAGTCTCGATCTGCGACTCGAGGATCGCAAACCAGAGCTCCTGGGCC 8126 Query 114664 -TGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACT 114722 || | |||| ||| || |||||| |||||| || | ||||||| Sbjct 8125 TTGACCACCCGGCG--GGCGCGGCCCTCCAGCTCGTAGCGCTCATACTTCTCCTCAAACT 8068 Query 114723 C-TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGA 114781 | || |||||| || | || || || |||| | ||||||||||| ||||| | Sbjct 8067 CCTTGCCCCACGAG-TCAAACAGGCCGGGCGCCTCGTTGGGGCAGAAGAGCGACCAGTCG 8009 Query 114782 CCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAAGAGATCC 114841 || || ||| || ||||||||||||||||| |||||||| || | ||||||| || Sbjct 8008 CCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCG 7949 Query 114842 CGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGATAT 114899 ||| ||| | |||| || | || || || | |||||||||||| | ||| | Sbjct 7948 CGA--GCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTGAGCTCCAAAAAGTCAAAGATGT 7891 Query 114900 CCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCCTGGT 114956 | ||||||||||| || || || | || | | ||||| || | || |||||| Sbjct 7890 CGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGT 7831 Query 114957 TTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCAGATTGGC 115016 || || | || ||| | || | ||||| ||||| || | || ||| | || || Sbjct 7830 CGACGTAGCGGGCAGTGTCGTTGTAGACGCGCAGCATCGGGACGAGACCGTTCGAGGTGC 7771 Query 115017 CATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCATGGATGTGCATACCAAT 115074 | || || || ||||| ||||| || ||| | || ||| | || || Sbjct 7770 CGTTGGTGCCGCGAATGTACGAG--TTGGAGGCGCGGATGCGGTGGGCAGCGACGCCGAT 7713 Query 115075 ACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCGTCGAT 115134 ||| || || |||| ||||| | ||||||| | |||| || ||||||| || ||||| Sbjct 7712 ACCGCCAGCTGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGATACCCTCGAT 7653 Query 115135 CGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGC 115194 |||||| |||| | | || |||||||| ||| | || || | || || || || Sbjct 7652 CGAGTCCTCCTTCATGGTGAGGAGGAAGCACGACGAAAGCTGCGGGCGGGGGGTGCCGGC 7593 Query 115195 GTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGTAGGTCTC 115254 |||||||||||| ||||| |||||| |||| | ||| || | | ||||||||||| Sbjct 7592 GTTGAAGAGGGTCGGTGTGGCGTGGGTGAAGAGCTGTTGCGAGAGCAAGTCGTAGGTCTC 7533 Query 115255 CAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTATTG 115314 | ||||||||| |||| ||| ||||| ||||| | || ||||| | ||||| || Sbjct 7532 GATGACGGCGGGGATGTTGTCCATGTGAAGACCGACGGCAACACGCATGAGCATGTGCTG 7473 Query 115315 GGG 115317 ||| Sbjct 7472 GGG 7470 >seq18213 Length=2148 Score = 206 bits (228), Expect = 3e-48 Identities = 417/610 (68%), Gaps = 14/610 (2%) Strand=Plus/Plus Query 114716 TCAAACTC-TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 114774 |||||||| || |||||| || | || || || |||| | ||||||||||| || Sbjct 64 TCAAACTCCTTGCCCCACGAG-TCAAACAGGCCGGGCGCCTCGTTGGGGCAGAAGAGCGA 122 Query 114775 CCATTGACCACCCTCCTCAACACGCTTCATGAAGAGGTCTGGGATCCAGAGAGCTGAGAA 114834 ||| | || || ||| || ||||||||||||||||| |||||||| || | |||| Sbjct 123 CCAGTCGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAA 182 Query 114835 GAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCC 114892 ||| || ||| ||| | |||| || | || || || | |||||||||||| Sbjct 183 GAGGTCGCGA--GCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTGAGCTCCAAAAAGTCA 240 Query 114893 ATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCA 114949 | ||| || ||||||||||| || ||||| | || | | ||||| || | || Sbjct 241 AAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCCTTGCGCTTGCCGCCG 300 Query 114950 GCCTGGTTTACATACCTCGCTGTGGCATTAAATACGCGAAGCATTGGAATGATACCATCA 115009 |||||| || || | || ||| | || | ||||| ||||| || | || || || Sbjct 301 CCCTGGTCGACGTAGCGGGCAGTGTCGTTGTAGACGCGCAGCATCGGGACGAGACGTTC- 359 Query 115010 GATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCATGGATGTGCA 115067 || ||| || || || ||||| ||||| || ||| | || ||| | Sbjct 360 GAGGTGCCGTTGGTGCCGCGAATGTACGAG--TTGGAGGCGCGGATGCGGTGGGCAGCGA 417 Query 115068 TACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCC 115127 || ||||| || || |||| ||||| | ||||||| | |||| || ||||||| | Sbjct 418 CGCCGATACCGCCAGCTGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGATAC 477 Query 115128 CGTCGATCGAGTCACCCTTATTTGCGATAAGGAAGCAGCTCGACATTTGTGGCCTTGGTG 115187 | ||||||||||| |||| | | || |||||||| ||| | ||||| | || | Sbjct 478 CCTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCACGACGAAAGCTGTGGGCGGGGGG 537 Query 115188 TACCAGCGTTGAAGAGGGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTATCGT 115247 | || |||||||||||||| || || |||||| |||| | ||| || | | |||| Sbjct 538 TGCCGGCGTTGAAGAGGGTGGGCGTGGCGTGGGTGAAGAGCTGTTGCGAGAGCAAGTCGT 597 Query 115248 AGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACA 115307 ||||||| | ||||||||| |||| ||| ||||| ||||| | || ||||| | || Sbjct 598 AGGTCTCGATGACGGCGGGGATGTTGTCCATGTGAAGACCGACGGCAACACGCATGAGCA 657 Query 115308 TGTATTGGGG 115317 ||| ||||| Sbjct 658 TGTGCTGGGG 667 >seq2671 Length=7052 Score = 132 bits (146), Expect = 6e-26 Identities = 159/212 (75%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105 ||||||||| ||| || |||||||| ||| |||||| || || |||||| || || Sbjct 2995 GGCAAACTCGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCC 3054 Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165 ||||||||||| || ||||| | |||||| || | ||| || || |||||||||||||| Sbjct 3055 GGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGAT 3114 Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG-CG-CG-ACTTTGTGTC 126222 ||||| || |||||| ||| ||| ||||| ||||||| | || || || ||| Sbjct 3115 GCCCTCGACTGCGGCGAACCCAACGAGGCGCTCGGCAAAGGTGTCGACGCCCTCCTTGTT 3174 Query 126223 AAACCACTTCATCGCCCACTGCGCCTTTTTCT 126254 | ||| ||||||||||| ||||| |||| Sbjct 3175 GATCCATCGCATCGCCCACTCGGCCTTCTTCT 3206 >seq21360 Length=1073 Score = 100 bits (110), Expect = 3e-16 Identities = 292/447 (65%), Gaps = 2/447 (0%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || ||||||||||| ||||||||||| |||| |||||| || | |||||||||| Sbjct 979 CGCAGGTAGTACATGCCCGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTG 920 Query 113657 AACTTGGAGAGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAG 113716 | ||||| | | || ||||| ||| ||| | ||| || |||||| || Sbjct 919 AGCTTGGCAAACGAGGGCTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAG 860 Query 113717 CGTCCA-CGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGTTCT 113775 | | | || || || ||||| || || | | | | ||||| || || | Sbjct 859 -GCCGAGCGGTCGGCGGCCATGTCGATGATGACGCGCTGGGGCAGCTCCCATACCGTCTT 801 Query 113776 GTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCTT 113835 |||||| ||||| || || || ||||| || |||| |||| ||||| || Sbjct 800 GTAGAGCTTCTTGATGTCGTCAGGGATCTCGTCGATGCGCTGGACCGAGCCGTTGTGCTG 741 Query 113836 GACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG 113895 ||| | | ||| | | | |||||||| || | | ||| || || || Sbjct 740 GACGAGCTTGTTCTTGAGCTGCGGGGACCAGAGGCCGCGCAGCTGGAGCTCGCGCAACAG 681 Query 113896 ATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGT 113955 |||| ||||| || || || || || ||| |||| | | ||||| |||||||| Sbjct 680 GTGCTCGTTGACGACCGTGAAGTCGCCGGCCAGGATGCGGCGCGTGTAGATGTTGGTCGT 621 Query 113956 GTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGGG 114015 ||| |||||||||||||| ||||| || | ||| || | ||| || || || |||||||| Sbjct 620 GTAGGGCTCAAAGCACTCGTTGTTGCCGAGGATCTGCGAGGTCGACGCAGTCGGCATGGG 561 Query 114016 TGCCATGAGAAGGCTGTTACGGAGACC 114042 || | ||| || ||| ||||| || Sbjct 560 CGCGACGAGCAGCGAGTTGCGGAGGCC 534 >seq283 Length=14928 Score = 95.1 bits (104), Expect = 1e-14 Identities = 310/471 (66%), Gaps = 18/471 (4%) Strand=Plus/Minus Query 125870 AGGAGACGATCCGAGACGTACTCAATGTACTCAGACATCTTCTCAGAGTTCATACCGATG 125929 || || ||||| | ||| | || || |||| | |||| | | | |||||| |||||| Sbjct 3185 AGCAGGCGATCGGCCACGAATTCGATATACTGACACATGAGCCCGGCGTTCATGCCGATG 3126 Query 125930 AGGTTACATGGG-AGCGCGTCCAAGATGAACCCCTTCTCAATTTCCACGGCTTCCCGCAC 125988 || ||| || |||| || || ||| |||||||||| || |||||||| | | Sbjct 3125 AGCG-ACACCGGCAGCGATTCTGTGACAAACTCCTTCTCAATCTCGACGGCTTCGAGGAT 3067 Query 125989 GATGGCGTGAATGGT---GTCCACCCCAGGTCTATTGC---GCAAAGTCTTGAAGAGTTC 126042 ||| || ||| ||||||| ||| | ||| ||| | | || ||| Sbjct 3066 GATC---TGCTTGGGCACGTCCACCGAGGGTTTGTTGACGAGCATGCTGTAGAGGAGG-- 3012 Query 126043 CACGGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAG 126102 || |||||| || || | || || || || ||||| || || || ||| || Sbjct 3011 CA-GGCAAAGTCGGCATGCATCCCTTCATCTCGACTAATGAGCTCGTTGGAAAAGGCGAG 2953 Query 126103 TCCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAA 126162 || |||||||| || |||||||| | ||| || || | || || || || |||||||| Sbjct 2952 GCCGGGCATGAGTCCGCGCTTCTTGAGCCA-AAGATGGAGCAGAAGGAGCCAGAGAAGAA 2894 Query 126163 GATTCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG-CGCG--ACTTTGT 126219 ||| ||||| || || ||||| | ||| || || | || | | || | || | Sbjct 2893 GATGCCCTCGACGGCGGCAAACGCCACGAGGCGTTCGGGGAATGTGTCGAGTCCCTCCTT 2834 Query 126220 GTCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGC 126279 | | | |||||| | |||||||| ||||| || || |||| ||||||| ||| || Sbjct 2833 GGCGATCCACTTGAGCGCCCACTCGGCCTTGCGCTTGACCGACGGCACGGTCTCGATGGC 2774 Query 126280 TTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATGTACTTATCTATGAG 126330 | ||||| | ||||| || |||||||||| ||| | || ||||| Sbjct 2773 GTTGAAGAGGTGGTTCTTCTCCTGCGGATCTTTGACGTAGGTGTCGATGAG 2723 >seq8173 Length=3122 Score = 91.5 bits (100), Expect = 2e-13 Identities = 196/289 (68%), Gaps = 7/289 (2%) Strand=Plus/Plus Query 126047 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCCT 126106 ||||| || ||| ||||||||||| ||| ||| || || || |||| || || Sbjct 1527 GCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGACCG 1586 Query 126107 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGATT 126166 ||||| || || |||||||| | |||||| || | || || || || ||||||||||| Sbjct 1587 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATG 1646 Query 126167 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGA----CTTTGTGTC 126222 ||||| || ||||| | | ||||||||| | |||| | ||| || || Sbjct 1647 CCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGG-TCTCGACACCCTCCTTGCA 1705 Query 126223 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTC 126282 || ||| ||| ||||||| ||||| |||| | | || || |||| || || Sbjct 1706 AATCCAGCGCATGGCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGGCCCG 1765 Query 126283 AAAGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 126330 ||||| | | ||| || ||| |||||||| | ||| | || ||||| Sbjct 1766 GAAGAGGTGGTCCTTCTC-GATCGGATCTTTAACGTAGGTGTCGATGAG 1813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597004155610920