Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq960 354 8e-93 seq18213 208 8e-49 seq21360 197 1e-45 seq2671 98.7 1e-15 >seq960 Length=8959 Score = 354 bits (392), Expect = 8e-93 Identities = 897/1356 (66%), Gaps = 56/1356 (4%) Strand=Plus/Plus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| |||||||| |||||||| || ||||| || ||| | || ||||| ||||| Sbjct 7572 GCCACACCGACCCTCTTCAACGCCGGCACCCCCCGCCCGCAGCTTTCGTCGTGCTTCCTC 7631 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | || | |||| ||||| ||| || || | ||||| |||||| | || || | Sbjct 7632 CTCACCATGAAGGAGGACTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTC 7691 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || ||||| || || |||| | | || ||| || Sbjct 7692 ATCTCCAAGTCAGCTGGCGGTATCGGCGTCGCTGCCCACCGCATCCGCGCCTCCAACTCG 7751 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||||| ||||| |||||||| ||||| |||||||| ||||| || |||| |||| Sbjct 7752 TACATTCGCGGCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAAC 7811 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || | || |||||||| |||||||| || || | | | ||||| | || || ||||| Sbjct 7812 GACACTGCCCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTAT 7871 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 |||||||| |||||||| ||| | | || | || || |||||||||||||| Sbjct 7872 CTCGAGCCGTGGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAG 7931 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||||| | || | ||||||||||||| || ||| | || ||||| || ||| Sbjct 7932 GA---GGAGAACCGCGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATG 7988 Query 94309 AAACGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTG 94368 || ||||||||| | || |||| || || || ||||| || ||||| ||| Sbjct 7989 AAGCGCGTCGAGTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTG 8048 Query 94369 TCCGACGTTTGTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGGCAAG 94428 | ||| || || | ||||| || ||||| || ||||| | ||||| Sbjct 8049 TTTGACTCGTGGGGCAAGGAGTTTGAGGAGAAGTATGAGCGCTACGAGCTGGAGGGCCGC 8108 Query 94429 GCCAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGGAG 94488 ||| | ||| | | || | |||| ||| | |||| | || ||| | ||| Sbjct 8109 GCCCGCCGGGTGGTCAAGGCCCAGGAGCTCTGGTTTGCGATCCTCGAGTCGCAGATCGAG 8168 Query 94489 ACGGGTACGCCCTACATCTTGTTCAAGGACTCTGTCAACGCCAAGTCCAACCAGCAGCAC 94548 || || ||||||||||| | | ||||||| | |||| |||||| |||||||||||| Sbjct 8169 ACTGGCACGCCCTACATGCTCTACAAGGACGCCTGCAACAGCAAGTCGAACCAGCAGCAC 8228 Query 94549 CTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCGGAC 94608 || || |||| || ||||| |||||||| ||| | || |||| || || || ||| Sbjct 8229 CTGGGCACGATCCAGTCGTCGAACCTGTGCACGGAGGTCATCCAGTACACCTCGCCCGAC 8288 Query 94609 GAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCACTTTCGTGCGAGATGCCTAC 94668 || | || ||||| ||||||| ||| ||| |||| ||| ||| | Sbjct 8289 GAAGTGGCCGTGTGCAACCTGGCCTCGATCGCCCTGCCCAAGTTCAT------------- 8335 Query 94669 ACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACTTCGCGGGAAGGATGGT--- 94724 |||| || || ||| |||| || |||| | ||| || || | | | || Sbjct 8336 -CGTCGACGGC-CAGTTTGATCACCAGAAGCTGTTTGA----CGTGGTCAAGGTCGTCAC 8389 Query 94725 CTTGAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCGTCCCGGAGGCGGAGAACTC 94784 | |||||| |||| ||| ||||||| |||| |||||| || || ||||| | ||| Sbjct 8390 CAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCGGTGCCCGAGGCCCGCACCTC 8449 Query 94785 AAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTTTCGCGGACGCGCTGGTGAT 94844 |||| | || || ||||||||||| ||||| ||||| | || |||| | |||| Sbjct 8450 GAACCAGCGCCACCGCCCCATCGGCATTGGCGTGCAGGGCCTGGCCGACGTCTTCATGAT 8509 Query 94845 GATGCGTCTGCCCTACGACTCTGTCGACG-CGGCGGGTTTGAATTTGAACATATTCGAAA 94903 |||| | || | || | ||| | | ||| | | || ||| || || | Sbjct 8510 CCTGCGCCACCCGTGGGAGAGCGACGAGGCCCGCGAG-CTCAACCGCGCCATCTTTGAGA 8568 Query 94904 GCATTTA---------TTACGGGGCCATGAAACAATCCGTCCACTTGGCCAGATCGGACG 94954 ||| || || || |||| ||| || || | |||| || || | Sbjct 8569 CCATCTACTATGCCGCTTGCGTGGCCTCGAA------CG--AGCTGGCCCAGGTC-GAGG 8619 Query 94955 GCGGGCCACACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGCATTTTTCAGTTCGA 95012 || | |||| | | || ||| ||||| | | || |||||| | || ||| Sbjct 8620 GC---ACCTACGAGACCTACCCCGGCTCGCCGGCCTCGA--AGGGCAAGCTGCAACCCGA 8674 Query 95013 CCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTACGCGCTGATGTTAT 95072 ||||||||| || || |||| | | ||||||| |||| ||||| | || Sbjct 8675 CCTCTGGGGCGTCGTCCCGTCGGACCGTTGGGACTGGGCCACTCTGCGCGCCAACATTGC 8734 Query 95073 CAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACGGCCTCCACGGCGCA 95132 | ||||| | ||| ||||||| || || |||||||| || ||||| || |||| Sbjct 8735 CCGCCACGGCCTCCGCAACTCGCTGCTCGTCGCGCCCATGCCGACTGCCTCGACCTCGCA 8794 Query 95133 GATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGGGT 95192 |||||| ||||||||||||| || || |||| ||| ||||| | |||| | || | Sbjct 8795 GATCCTCGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATCTACACGCGCCGCAT 8854 Query 95193 GCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCT 95228 || ||||| || ||| ||||| ||||| ||||||| Sbjct 8855 CCTTGCCGGCGACTTCACCGTCGTCAACGAGCACCT 8890 >seq18213 Length=2148 Score = 208 bits (230), Expect = 8e-49 Identities = 307/432 (71%), Gaps = 7/432 (2%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||||| || ||||| |||||||| || ||||| |||||| | || ||||| ||||| Sbjct 565 GCCACGCCCACCCTCTTCAACGCCGGCACCCCCCGCCCACAGCTTTCGTCGTGCTTCCTC 506 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 | || | |||| ||||| ||| || || | ||||| |||||| | || || | Sbjct 505 CTCACCATGAAGGAGGACTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTC 446 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | || || || ||||| || || |||| | | || ||| || Sbjct 445 ATCTCCAAGTCAGCTGGCGGTATCGGCGTCGCTGCCCACCGCATCCGCGCCTCCAACTCG 386 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||||| ||||| |||||||| |||| | ||||||| ||||| || |||| |||| Sbjct 385 TACATTCGCGGCACCAACGGCACCTCGAACGTC-TCGTCCCGATGCTGCGCGTCTACAAC 327 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || | || |||||||| |||||||| || || | | | ||||| | || || |||| Sbjct 326 GACACTGCCCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTAC 267 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 |||||||| |||||||| ||| | | || | || || |||||||||||||| Sbjct 266 CTCGAGCCGTGGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAG 207 Query 94252 GATCTGGAGA---GGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATG 94308 || ||||| | || | ||||||||||||| || ||| | || ||||| || ||| Sbjct 206 GA---GGAGAACCGCGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATG 150 Query 94309 AAACGCGTCGAG 94320 || ||||||||| Sbjct 149 AAGCGCGTCGAG 138 >seq21360 Length=1073 Score = 197 bits (218), Expect = 1e-45 Identities = 658/1018 (65%), Gaps = 44/1018 (4%) Strand=Plus/Plus Query 94530 CAAGTCCAACCAGCAGCACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGT 94589 |||||| |||||||||||||| || |||| || ||||| |||||||| ||| | | Sbjct 2 CAAGTCGAACCAGCAGCACCTGGGCACGATCCAGTCGTCGAACCTGTGCACGGAGGTCAT 61 Query 94590 CGAGTATACTTCTCCGGACGAGATTGCTGTGTGTAACCTGGGCTCCATCAACCTGTCCAC 94649 | |||| || || || ||||| | || ||||| ||||||| ||| ||| |||| ||| Sbjct 62 CCAGTACACCTCGCCCGACGAAGTGGCCGTGTGCAACCTGGCCTCGATCGCCCTGCCCAA 121 Query 94650 TTTCGTGCGAGATGCCTACACGTCTACTGCTTCGTTCGATCTGGAGGAGCT-TGTGAACT 94708 ||| | |||| || || ||| |||| || |||| | ||| Sbjct 122 GTTCAT--------------CGTCGACGGCCA-GTTTGATCACCAGAAGCTGTTTGA--- 163 Query 94709 TCGCGGGAAGGATGGTCTT---GAACCTGAACAGGGTAATCGACAAGAACTTCTACCCCG 94765 || || | | | ||| |||||| |||| ||| ||||||| |||| |||||| | Sbjct 164 -CGTGGTCAAGGTCGTCACCAAGAACCTCAACAAGGTGATCGACATCAACTACTACCCGG 222 Query 94766 TCCCGGAGGCGGAGAACTCAAACCTGAAGCATCGGCCCATCGGCATCGGCGTCCAGGGTT 94825 | || ||||| | ||| |||| | || || ||||||||||| ||||| ||||| Sbjct 223 TGCCCGAGGCCCGCACCTCGAACCAGCGCCACCGCCCCATCGGCATTGGCGTGCAGGGCC 282 Query 94826 TCGCGGACGCGCTGGTGATGATGCGTCTGCCCTACGACTCTGTCGACGCG-GCGGGTTTG 94884 | || |||| | |||| |||||| || | || | ||| || ||| | | Sbjct 283 TGGCCGACGTCTTCATGATCCTGCGTCACCCGTGGGAGAGCGACGAGGCCCGCGAGCTCA 342 Query 94885 AATTTGAACATATTCGAAAGCATTTATTACGGGGC---CATGAAACAATCCGTCCACTTG 94941 | | ||| || || | ||| || || | || | || || | | || Sbjct 343 ACCGCGC-CATCTTTGAGACCATCTACTATGCCGCTTGCGTGGCC---TCGAACGAGCTG 398 Query 94942 GCC-AGATCGGACGGCGGGCCACACGAATCGTTCCGCGGATCGCC--CTTGGAACAGGGC 94998 ||| || ||| | ||| | |||| | | || ||| ||||| | | ||| |||| Sbjct 399 GCCCAGGTCG-AGGGCA---CCTACGAGACCTACCCCGGCTCGCCGGCCTCGAA--GGGC 452 Query 94999 ATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAAGCTCTA 95058 | | ||| |||||||||||| || || |||| | | ||||||| |||| Sbjct 453 AAGCTGCAGCCCGACCTCTGGGGCGTCGTCCCGTCGGACCGTTGGGACTGGGCCACTCTG 512 Query 95059 CGCGCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCATGCCCACG 95118 ||||| | || | ||||| | ||| ||||||| || || |||||||| || Sbjct 513 CGCGCCAACATTGCCCGCCACGGCCTCCGCAACTCGCTGCTCGTCGCGCCCATGCCGACT 572 Query 95119 GCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTG 95178 || || || |||||||||| ||||||||||||| || || |||| ||| ||||| | Sbjct 573 GCGTCGACCTCGCAGATCCTCGGCAACAACGAGTGCTTTGAGCCCTACACGACCAACATC 632 Query 95179 TACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGAC 95238 |||| | || | || ||||| || ||| | ||| ||||| ||||||| | || || Sbjct 633 TACACGCGCCGCATCCTGGCCGGCGACTTCACGGTCGTCAACGAGCACCTGTTGCGCGAG 692 Query 95239 CTGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGC 95298 || | | || | ||| || |||||||| | || | | ||||||| Sbjct 693 CTCCAGCTGCGCGGCCTCTGGTCCCCGCAGCTCAAGAACAAGCTCGTCCAGCACAACGGC 752 Query 95299 TCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGG 95358 || |||||| |||| | || || || ||||||||| |||||||||||| || ||| Sbjct 753 TCGGTCCAGCGCATCGACGAGATCCCTGACGACATCAAGAAGCTCTACAAGACGGTATGG 812 Query 95359 GAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGCGGGCCCTTCATCTGCCAG 95418 ||| | || |||||||| || ||||| || |||| |||| | ||| |||| |||| Sbjct 813 GAGCTGCCCCAGCGCGTCATCATCGACATGGCCGCCGACCGCTCGGCCTACATCGACCAG 872 Query 95419 AGNNNNNNNNNNNNNNNNNNNATGGCCGAGCCCAGTCG--CGGAAAAATAACGTCCATGT 95476 || |||| ||||||| ||| | || | || || ||| Sbjct 873 AGCCAGTCGCTCAACGTCTACATGGGCGAGCCC--TCGTTTGCCAAGCTCACCTCGATGC 930 Query 95477 TGTTCTACGGGTGGAGAAAGGGTCTCAAGACCGGTATGTATTATTTGCGAACCAGGCC 95534 ||||||| ||| | ||||| |||||||| || ||||| || |||| ||| |||| Sbjct 931 ACTTCTACGCCTGGCGCAAGGGCCTCAAGACGGGCATGTACTACCTGCGCACCCGGCC 988 >seq2671 Length=7052 Score = 98.7 bits (108), Expect = 1e-15 Identities = 87/109 (80%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 95292 CAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGAC 95351 |||||||||||| ||||||||| | || || |||| ||||||| ||||||||||| Sbjct 1673 CAACGGCTCCGTGCAGAACATCGACAAGATCCCTCCGGACCTCAAGGCCCTCTACAAGAC 1732 Query 95352 CGTGTGGGAGATCCCGCAGCGCGTGATACTCGACCACGCGGCCGCCCGC 95400 ||||||||||||| | |||||||| || ||||| || |||| |||| Sbjct 1733 CGTGTGGGAGATCTCACAGCGCGTCATCATCGACATGGCTGCCGACCGC 1781 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494433793112040