Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq960 120 3e-22 seq1090 91.5 1e-13 seq35388 89.7 5e-13 seq20914 89.7 5e-13 seq2664 89.7 5e-13 seq17739 86.0 6e-12 seq10788 86.0 6e-12 seq13648 82.4 7e-11 >seq960 Length=8959 Score = 120 bits (132), Expect = 3e-22 Identities = 569/886 (64%), Gaps = 31/886 (3%) Strand=Plus/Plus Query 122889 ATCGAGGAAAAGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTG 122948 ||||| || ||| ||| ||| || || || ||||||||||| || || | || | Sbjct 7446 ATCGACGACAAGATCGTCGAGCGCCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTT 7505 Query 122949 CAC--GGACGCGACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTT 123006 ||| |||| ||||| || | ||| || ||||| ||| | || ||| | | | Sbjct 7506 CACATGGACA--ACATCCCCGCCGTCATCGAGACCTACGACTTGCTCTCGCAACAGCTCT 7563 Query 123007 TCACGCACGCGAGTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGT 123066 |||| ||||| | || || | ||| ||||||||| || ||| | || |||| Sbjct 7564 TCACCCACGCCACACCGACCCTCTTCAACGCCGGCACCCCCCGCCCGCAGCTTTCGTCGT 7623 Query 123067 GTTTTTTGCTCACCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATT 123126 | || | |||||| || || ||| ||| |||||||| || || | | | Sbjct 7624 GCTTCCTCCTCACCATGAAGGAGGACTCGATCGAGGGTATCTACGACACGCTCAAGCAGT 7683 Query 123127 GCGCGTTGATTTCCAAATTTGGCGGCGGCATAGGCGTGAACG-TGCACGACGTAAGAG-G 123184 |||| | || ||||| | | ||||| || ||||| || ||| | || | | | Sbjct 7684 GCGCCCTCATCTCCAAGTCAGCTGGCGGTATCGGCGT---CGCTGCCCACCGCATCCGCG 7740 Query 123185 CCGCGGAAGCCG--CATCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTG 123242 || | || || ||| | ||||| |||| | | | ||| |||| | |||||| Sbjct 7741 CCTCC-AACTCGTACATTCGCGGCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTG 7799 Query 123243 CGAGTTTACAATAACGCCGTGCGGCACGTCGACCAGGGCGGC---AAACGCAAAGGCGCG 123299 || || ||||| || | | || ||||||||||||||||| || ||||| ||||| Sbjct 7800 CGCGTCTACAACGACACTGCCCGCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCC 7859 Query 123300 ATGGCGATCTATCTAGAACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGC 123359 | || |||||||| || |||||||||| || | | || ||||| | | || Sbjct 7860 TTTGCCATCTATCTCGAGCCGTGGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAG 7919 Query 123360 AACATGGGGGCGGAAGAAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGAT 123419 ||| || ||| || || || ||||| | || |||| | ||| | ||||| Sbjct 7920 AACCACGGCAAGGAGGAGAACCGCGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGAC 7979 Query 123420 TTGTTTATGCGACGCGTAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGT 123479 | || ||| ||||| | | ||||| ||||||||| | || ||| | | Sbjct 7980 CTCTTCATGAAGCGCGTCGAGTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCG 8039 Query 123480 CCCGGCTTGAGCGACGTTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGC 123539 |||||| || ||| | ||||| ||||||| ||| ||| | || ||||||| Sbjct 8040 CCCGGCCTGTTTGACTCGTGGGGCAAGGAGTTTGAGGAGAAGTATGAGCGCTACGAGCTG 8099 Query 123540 GAAGGCAAACAGGTTAGTCAGGT--TCC-GGCACGTGATTTGTTCAAATTT---ATTATC 123593 || ||| | | | | ||| || ||| | || | || ||| || || Sbjct 8100 GAGGGC---CGCGCCCGCCGGGTGGTCAAGGCCCAGGA---GCTCTGGTTTGCGATCCTC 8153 Query 123594 GAAACACAAGTCGAAACCGGAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAA 123653 || | || |||| || || ||||| |||||||||||||| |||||||||||||| || Sbjct 8154 GAGTCGCAGATCGAGACTGGCACGCCCTACATGCTCTACAAGGACGCCTGCAACAGCAAG 8213 Query 123654 ACCAATCAG-AGCAACTTGGGAACAATAAAAT-GTAGTAATCTTTGCTCCGAAATTATCG 123711 | || ||| ||| || |||| || || | | || | || || ||| | || | ||| Sbjct 8214 TCGAACCAGCAGC-ACCTGGGCACGATCCAGTCGTCG-AACCTGTGCACGGAGGTCATCC 8271 Query 123712 AATACAGCGATGCCGATCAAGTGGCCGTGTGTAATTTGGCTTCGAT 123757 | |||| | |||| ||||||||||||| || |||| ||||| Sbjct 8272 AGTACACCTCGCCCGACGAAGTGGCCGTGTGCAACCTGGCCTCGAT 8317 >seq1090 Length=10094 Score = 91.5 bits (100), Expect = 1e-13 Identities = 165/239 (69%), Gaps = 2/239 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| | || || || || ||||| ||||| || || ||| Sbjct 7545 ATACCGCCACGGAGGCGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCG 7604 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| ||| || | || || || ||| | || | || ||||||||||| Sbjct 7605 GCCAAGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGG 7664 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 |||||||| || || || || || || || || | || | || | ||||||||| ||||| Sbjct 7665 GGAATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTGTCGGACGACTC 7723 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||| ||||| || | ||| || || || || || || || || || ||||| ||| || Sbjct 7724 GACCTCGAGCGTGATCGTCTTACCCGTAAGGGTCTTGACGAAGATCTGCATGCCGCCAC 7782 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || || ||||| | | || || || || || || ||||| ||||| || || || | Sbjct 7320 CCACCACGGAGGCGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCG 7379 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| ||| || | || || || ||| | || | || ||||||||||| || Sbjct 7380 AGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGG 7439 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || || | || | || | ||||| || |||||||| Sbjct 7440 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCCGAGGACTCGAC 7498 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||||| |||| || |||||||| ||||| || || || || ||||| ||| || Sbjct 7499 CTCGAGCGTAATGGTCTTGCCGGTCAGAGTCTTGACGAAGATCTGCATACCGCCAC 7554 >seq35388 Length=1012 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || || || || || |||||||| ||||| || || ||| Sbjct 253 CCGCCGCGCAGGCGAAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCC 194 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | || ||||||||||| ||| Sbjct 193 AGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAAATGAGGCGCTGCTGGTCCGGGGGA 134 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || ||||| ||||| || || || | || | || | |||||| || |||||||| Sbjct 133 ATACCCTCCTTATCCTGAATCTTCTGCTTCA-CGTTCTCGATGGTGTCCGACGACTCGAC 75 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||| || || || || | || || || || || ||||| Sbjct 74 CTCGAGAGTAATAGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 27 >seq20914 Length=1556 Score = 89.7 bits (98), Expect = 5e-13 Identities = 163/236 (69%), Gaps = 2/236 (1%) Strand=Plus/Minus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || |||||||| | | || || || || || || ||||| ||||| || || ||| Sbjct 272 CCGCCGCGGAGACGAAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCC 213 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | || ||||||||||| ||| Sbjct 212 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGA 153 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 || || || || || || || || || || | || | || | |||||||| |||||||| Sbjct 152 ATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCGGACGACTCGAC 94 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||||| |||| ||| || || || || ||||| || || || ||||| ||| || Sbjct 93 CTCGAGCGTAATCGTCTTACCCGTAAGGGTTTTGACGAAGATCTGCATGCCGCCAC 38 >seq2664 Length=7344 Score = 89.7 bits (98), Expect = 5e-13 Identities = 160/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || || || || || || ||||| ||||| || || || Sbjct 1395 ATACCACCGCGCAGGCGGAGGACGAGGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCA 1454 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | || || || ||| | || | || ||||||||||| Sbjct 1455 GCGAGGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGG 1514 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| || || || || || || || || |||| || | || | ||||| |||||||| Sbjct 1515 GGAATTCCCTCCTTGTCCTGGATCTTCTGCTTGA-CGTTCTCAATAGTGTCCGAAGACTC 1573 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| || | || ||||| || || || || || || |||||||| Sbjct 1574 GACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTCTTGACGAAGATTTGCAT 1624 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 45114 CCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTG 45173 || ||||| || | | || || || || || |||||||| ||||| || || ||| Sbjct 1170 CCGCCGCGCAGGCGAAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCC 1229 Query 45174 ACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGA 45233 | ||| || || | || || || ||| | || | || ||||||||||| || Sbjct 1230 AGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGG 1289 Query 45234 ATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGAC 45292 ||||| || || || || || || || || | || | || | |||||| || |||||||| Sbjct 1290 ATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATGGTGTCCGACGACTCGAC 1348 Query 45293 TTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 |||||||||| || || || || | || || || || |||||||| Sbjct 1349 CTCGAGAGTAATAGTCTTACCCGTCAAGGTCTTGACGAAGATTTGCAT 1396 >seq17739 Length=625 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || || || ||| ||| || | || Sbjct 614 TGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCGAGCTGC 555 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | || ||||||||||| || ||||| || || || ||||| || Sbjct 554 TTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGAATCTTC 495 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || || | || | || | ||||| || |||||||| ||||| |||| || |||||||| Sbjct 494 TGCTTCA-CGTTCTCGATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGT 436 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || ||||| Sbjct 435 GAGGGTCTTCACGAAGATCTGCAT 412 >seq10788 Length=3043 Score = 86.0 bits (94), Expect = 6e-12 Identities = 159/231 (69%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || || ||||| | | ||| | || || || || ||||| ||||| || || || Sbjct 2505 ATGCCGCCACGGAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCA 2564 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || ||| ||| || | || || || ||| | || | || ||||||||||| Sbjct 2565 GCGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGG 2624 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || ||||| || || || || || || || || | || | || | ||||| || ||||| Sbjct 2625 GGGATGCCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCGATCGTGTCCGAGGACTC 2683 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||| ||||| |||| || |||||||| || || || || || || ||||| Sbjct 2684 GACCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2734 >seq13648 Length=1701 Score = 82.4 bits (90), Expect = 7e-11 Identities = 163/239 (68%), Gaps = 2/239 (1%) Strand=Plus/Minus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 || || ||||| || | | || || || || || || ||||| ||||| || || ||| Sbjct 1572 ATACCACCGCGCAGGCGGAGGACAAGGTGGAGAGTCGACTCCTTCTGGATGTTGTAGTCG 1513 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 | ||| | || || | || || || || | || | || ||||||||||| Sbjct 1512 GCCAGGGTACGACCGTCCTCGAGCTGCTTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGG 1453 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 || || || || || || || || || || || | || | || | |||||| || ||||| Sbjct 1452 GGGATACCCTCCTTGTCCTGGATCTTCTGCTTCA-CGTTCTCAATGGTGTCCGAGGACTC 1394 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATCGCGCGAC 45348 ||| ||||| |||| || ||||| || ||||| || || || || ||||| ||| || Sbjct 1393 GACCTCGAGCGTAATGGTCTTGCCAGTCAGAGTCTTGACGAAGATCTGCATACCGCCAC 1335 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451738783778040