Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq283 161 2e-34 seq21360 158 2e-33 seq960 134 2e-26 seq18213 131 3e-25 seq2671 123 4e-23 seq11040 86.0 1e-11 >seq283 Length=14928 Score = 161 bits (178), Expect = 2e-34 Identities = 295/426 (69%), Gaps = 16/426 (4%) Strand=Plus/Minus Query 159652 CTCGAAAAAGTTGGTCTTGCCCTCCATGGATATTGATTCCATGAACCCGAATGGGTTCTT 159711 ||| || ||||||||||||||||| | || || ||||| || ||| || ||| | Sbjct 3279 CTCAAAGAAGTTGGTCTTGCCCTCGAGTGAGATGAGCTCCATCCACGGGAAGGGATTCGT 3220 Query 159712 CACGTGATAGCGCTTCGGAAATCCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGAT 159771 || ||| |||| || ||||||| ||| |||||| | || ||||| |||||||| Sbjct 3219 TGAGTTGTAGTGCTTGGGGCATCCGAGGGCCACCAGCAGGCGATCGGCCACGAATTCGAT 3160 Query 159772 GTAGCTACACATCTGCTCACAGTTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAG 159831 || |||||| || | ||| || || | ||| || || |||| ||| | | Sbjct 3159 ATACTGACACATGAGCCCGGCGTTCATGCCGATGAGCGACACCGGCAGCGATTCTGTGAC 3100 Query 159832 AAACTCCTTCTCAATCTCGACCGCTTCGGTCACAATCTGC-GAGACACGTTCGTACCCCG 159890 ||||||||||||||||||||| |||||| | |||||| | ||||| | ||| | Sbjct 3099 AAACTCCTTCTCAATCTCGACGGCTTCGAGGATGATCTGCTTGGGCACGTCC--ACCGAG 3042 Query 159891 G----CTTGCCCAAAATGTGGTCCTTAAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCC 159946 | ||| | | ||| || | |||||||| ||||||||| |||| || Sbjct 3041 GGTTTGTTGACGAGCATGCTGT------AGAGGAGGCAGGCAAAGTCGGCATGCATCCCT 2988 Query 159947 TCGTCCCGAGAGATGAACTCGTTGGACATGATGAGGCCCGGCATGATCCCACGCGGTTTG 160006 || || ||| |||| ||||||||| | | |||||| ||||||| || ||| ||| Sbjct 2987 TCATCTCGACTAATGAGCTCGTTGGAAAAGGCGAGGCCGGGCATGAGTCCGCGCTTCTTG 2928 Query 160007 AGCCAAAAAATGGCCGCAAAAGCA-CCGCTAAAAAAGATCCCCTCCACGGCCGCAAACGC 160065 |||| ||| |||| ||| ||| | || || ||||| ||||| ||||| |||||||| Sbjct 2927 AGCC-AAAGATGG-AGCAGAAGGAGCCAGAGAAGAAGATGCCCTCGACGGCGGCAAACGC 2870 Query 160066 CACGAG 160071 |||||| Sbjct 2869 CACGAG 2864 >seq21360 Length=1073 Score = 158 bits (174), Expect = 2e-33 Identities = 337/492 (68%), Gaps = 11/492 (2%) Strand=Plus/Minus Query 203843 TCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCCGGTC 203902 || ||||||||||| || ||||| |||| |||| | | | ||| ||||||||||| ||| Sbjct 1017 TCGACCGTGAACTGGATCGCGTTGGCGGC-GGCCGGGTGCGCAGGTAGTACATGCCCGTC 959 Query 203903 TTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAG-TTTGCTCACGTTGGGGTC 203961 || |||||||| |||| |||| | |||||| || | || || || ||| ||| || Sbjct 958 TTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTGAGCTTGGCAAACG-AGGGCTC 900 Query 203962 GGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCTGCGGCCAT 204021 | |||||| | ||| || |||||||| ||||||||| | | || || || |||||||| Sbjct 899 GCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGATGTAGGCCGAGCGGTCGGCGGCCAT 840 Query 204022 ATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTGTGTT 204080 | ||| ||| ||| | | |||||| ||||||||| | | | ||| || ||| | Sbjct 839 GTCGATGATGACGCGCTGGGGCAGCTCCCATACCGTCTTGTAGAGCTTCT-TGATGTCGT 781 Query 204081 GAGGCACATCTTCCCACGTCCT-GATCGAGCCGTTGTCGGCCATCAGTCTCATCCTCGTC 204139 ||| | || | | | | || || ||||||||||| | || | || | | Sbjct 780 CAGGGATCTCGT-CGATGCGCTGGACCGAGCCGTTGTGCTGGACGAGCTTGTTCTTGAGC 722 Query 204140 TCCTCCCCCCACATGC--CCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGATCT 204197 | | ||| | || | | ||| ||||| |||| |||||| ||||| || | Sbjct 721 TGCGGGGACCAGAGGCCGCGCAGCTG--GAGCTCGCGCAACAGGTGCTCGTTGACGACCG 664 Query 204198 GAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACGCCT 204257 ||||| |||| ||| | | || ||| | | |||| | ||| | || || || || Sbjct 663 TGAAGTCGCCGGCCAGGATGCGGCGCGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCACT 604 Query 204258 CGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAGCAGGGAGT 204317 |||||||||||| ||||| | ||| || || |||||||| || | |||||| |||| Sbjct 603 CGTTGTTGCCGAGGATCTGCGAGGTCGACGCAGTCGGCATGGGCGCGACGAGCAGCGAGT 544 Query 204318 TGCGCACACCGT 204329 |||| | |||| Sbjct 543 TGCGGAGGCCGT 532 >seq960 Length=8959 Score = 134 bits (148), Expect = 2e-26 Identities = 297/438 (68%), Gaps = 8/438 (2%) Strand=Plus/Minus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| || |||||| ||||||||||||||| || || || || || | | | || Sbjct 7991 CTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTC 7932 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || ||||||| || | |||| ||| | | |||||||||||||||||||| | Sbjct 7931 CTTGCCGTGGTTCTTCTTGAGCTCCAAA-AAGTCAAAGATGTCGGCGTGCCACGGCTCGA 7873 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | ||||| | |||| || |||||||| || ||| | | Sbjct 7872 GATAGATGGCAAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCAGTGT 7813 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 ||||| | || ||||||||||| || |||||||| | ||| ||||| |||| | ||| Sbjct 7812 CGTTGTAGACGCGCAGCATCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCGCGAATGT 7753 Query 205404 CCGAGCCTTCAGCCCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGC 205461 |||| || | | || ||| | || |||| || ||||||| |||||| Sbjct 7752 ACGAGTTGGAGGCGCGGATGCGGTGGGCA--GCGACGCCGATACCGCCAGCTGACTTGGA 7695 Query 205462 GATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTG 205520 ||| ||||||||| |||| || ||| |||||| || |||| || || ||| || | Sbjct 7694 GATGAGGGCGCACTGCTTG-AGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGG 7636 Query 205521 TCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGC 205580 | | || ||||||| | |||| | | |||||| |||| |||||| || || Sbjct 7635 TGAGGAGGAAGCACGACGAAAGCTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGTG 7576 Query 205581 TGGCGTGGCTGAAGCGCT 205598 |||||||| ||||| ||| Sbjct 7575 TGGCGTGGGTGAAGAGCT 7558 >seq18213 Length=2148 Score = 131 bits (144), Expect = 3e-25 Identities = 297/438 (68%), Gaps = 9/438 (2%) Strand=Plus/Plus Query 205165 CTCCATAAACAGGTCGCTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTC 205224 || ||| || |||||| ||||||||||||||| || || || || || | | | || Sbjct 147 CTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTC 206 Query 205225 GTCTCCAAGGTTCTTTTTCAAGTCCAGCCAAGCCGCA-ATGTCGGCGTGCCACGGCTCTA 205283 | || ||||||| || | |||| ||| | | |||||||||||||||||||| | Sbjct 207 CTTGCCGTGGTTCTTCTTGAGCTCCAAA-AAGTCAAAGATGTCGGCGTGCCACGGCTCGA 265 Query 205284 ACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCG 205343 | | ||| | ||||| | |||| || |||||||| || ||| | | Sbjct 266 GGTAGATGGCAAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCAGTGT 325 Query 205344 CGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGG 205403 ||||| | || ||||||||||| || ||| |||| | ||| ||||| |||| | ||| Sbjct 326 CGTTGTAGACGCGCAGCATCGGGACGAGA-CGTTCGAGGTGCCGTTGGTGCCGCGAATGT 384 Query 205404 CCGAGCCTTCAGCCCTCA--CGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGC 205461 |||| || | | || ||| | || |||| || ||||||| |||||| Sbjct 385 ACGAGTTGGAGGCGCGGATGCGGTGGGCA--GCGACGCCGATACCGCCAGCTGACTTGGA 442 Query 205462 GATCTGGGCGCACT-CTTGCAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTG 205520 ||| ||||||||| |||| || ||| |||||| || |||| || || ||| || | Sbjct 443 GATGAGGGCGCACTGCTTG-AGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGG 501 Query 205521 TCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCCGCGTGGAAGAGCGTGGGGC 205580 | | || ||||||| | |||| | | |||||| |||| |||||| ||||| Sbjct 502 TGAGGAGGAAGCACGACGAAAGCTGTGGGCGGGGGGTGCCGGCGTTGAAGAGGGTGGGCG 561 Query 205581 TGGCGTGGCTGAAGCGCT 205598 |||||||| ||||| ||| Sbjct 562 TGGCGTGGGTGAAGAGCT 579 >seq2671 Length=7052 Score = 123 bits (136), Expect = 4e-23 Identities = 243/352 (69%), Gaps = 7/352 (2%) Strand=Plus/Plus Query 159734 CCGAGAGCCGCCAGCAACCTGTCTGCCACAAATTCGATGTAGCTACACATCTGCTCACAG 159793 ||||| ||| | |||| | ||| || |||| |||||||| ||||| | | | Sbjct 2807 CCGAGTGCCACGAGCAGGCGGTCGGCGGCAAACTCGATGTACTGGCACATGAGGCCTGCG 2866 Query 159794 TTGATCCCCAGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACC 159853 || || || | ||| || ||||| | |||| | |||||||||||| |||||||| Sbjct 2867 TTCATGCCGATGAGCGCCACCGGGAGTGACTCCGTGACAAACTCCTTCTCGATCTCGACG 2926 Query 159854 GCTTCGGTCACAATCTG-CGAGACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTT 159912 || ||| || ||||| | | |||| ||| | ||||||| || || | || | Sbjct 2927 GCCTCGAGGACGATCTGCCTTGGCACG-TCGCTCGACGGCTTGTTCACAA-GCATACCGT 2984 Query 159913 AAACAGGAGGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGA 159972 ||| |||||| ||||| ||| |||||| |||||||| || ||||| ||||||||| Sbjct 2985 --ACAAGAGGCAGGCAAACTCGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGA 3042 Query 159973 CATGATGAGGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACC 160032 | | |||||| ||||||| || || |||||||| || |||| || ||| | | Sbjct 3043 GAAGGCGAGGCCGGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGG-AACAGAAGGAGC 3101 Query 160033 GCTA-AAAAAGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAA 160083 | | || ||||| ||||| || || || ||| | ||||| | ||| |||| Sbjct 3102 CCGAGAAGAAGATGCCCTCGACTGCGGCGAACCCAACGAGGCGCTCGGCAAA 3153 >seq11040 Length=1541 Score = 86.0 bits (94), Expect = 1e-11 Identities = 180/268 (67%), Gaps = 3/268 (1%) Strand=Plus/Minus Query 160213 CGAGTACATTTCTGCGTGCACATTTTCGATGGCCATCTGAAAGTTGTAGAAATATGTCGC 160272 |||||||||||| | ||| | || ||||| || ||||| ||| |||||| | ||| Sbjct 1305 CGAGTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGC 1246 Query 160273 CTCCAGATACTGCACCTCCTGTGTGAACCTTTGACCCAGATTGGCATTAACCAACCCGTC 160332 ||| | |||||| |||| |||| | | |||| || | || | || || Sbjct 1245 CTCGGGCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATC 1186 Query 160333 GGCGGCCGCAAAGAAAGCCAACACGTGAGAGATGAAATGTCTCTCGTCTTTGTTGAGTCT 160392 | ||| || ||||| |||| |||||| |||||| || ||||||| |||||||| Sbjct 1185 GCTGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTCGTTGTTGAG--- 1129 Query 160393 CTTTTCCCAGTGTGTCACGTCTTGGGCCAAATCAACCTCTTCCGCGCTCCAATTGGCAGC 160452 | ||||||| ||| ||| | |||||| ||||| || ||| |||| | || Sbjct 1128 CGAAGCCCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGC 1069 Query 160453 CTGAGCAGTTTTGTACATGGCCCAGATG 160480 || || | |||||||| |||| ||| Sbjct 1068 CTCGGCCTTCTTGTACATCTCCCAAATG 1041 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 794690044147440