Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq960 150 2e-31 seq18213 138 1e-27 seq2671 123 3e-23 seq8173 104 3e-17 seq283 104 3e-17 >seq960 Length=8959 Score = 150 bits (166), Expect = 2e-31 Identities = 406/615 (66%), Gaps = 21/615 (3%) Strand=Plus/Plus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||||| || || ||||| | || ||| | || | || Sbjct 7469 CCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGT 7528 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| |||||| | | || | | |||| |||||| ||||| |||||||| Sbjct 7529 CATCGAGACCTACGACTTGCTCTCGCAACAGCTCTTCACCCACGCCACACCGACCCTCTT 7588 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| || || || | || || | || || ||||| | | | |||||||| Sbjct 7589 CAACGCCGGCACCCCCCGCCCGCAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGA 7648 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | || || |||| ||| |||| | || |||| ||||| |||| ||||| Sbjct 7649 CTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGG 7708 Query 111851 TGGTATCGG----GATGCACATC-CATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903 |||||||| | ||| || | ||| | | ||| ||| |||||| || | | Sbjct 7709 CGGTATCGGCGTCGCTGCCCACCGCAT-----CCGCGCCTCCAA--CTCGTACATTCGCG 7761 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 | || || || || | ||| | | || ||||| ||||| | |||| ||| || | Sbjct 7762 GCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCC 7821 Query 111964 GCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 |||| || |||| | || | |||||||| | | || ||||||| ||||| | Sbjct 7822 GCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTATCTCGAGCCGT 7881 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--C 112078 ||||||| || ||| | || || | ||| | ||||| || | |||||| | Sbjct 7882 GGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACC 7941 Query 112079 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 112138 ||| | ||||| ||||||| || || ||||| || || |||||||||||| | || || Sbjct 7942 GCGCT--CGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGA 7999 Query 112139 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGT 112198 | | ||| | ||||| ||||| || || || |||| ||||| || | || | Sbjct 8000 GTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTG 8059 Query 112199 GGGTGAGGAGTTTGA 112213 ||| |||||||||| Sbjct 8060 GGGCAAGGAGTTTGA 8074 >seq18213 Length=2148 Score = 138 bits (152), Expect = 1e-27 Identities = 404/615 (66%), Gaps = 22/615 (4%) Strand=Plus/Minus Query 111611 CCCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGT 111670 ||| ||| ||||| ||||||| || || ||||| | || ||| | || | || Sbjct 668 CCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGT 609 Query 111671 TTTGGAGACATACGACAAGATGTCCCGTGGTATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||| |||||| | | || | | |||| |||||| || || |||||||| Sbjct 608 CATCGAGACCTACGACTTGCTCTCGCAACAGCTCTTCACCCACGCCACGCCCACCCTCTT 549 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| || || || | || || | || || ||||| | | | |||||||| Sbjct 548 CAACGCCGGCACCCCCCGCCCACAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGA 489 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || ||| | || || |||| ||| |||| | || |||| ||||| |||| ||||| Sbjct 488 CTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGG 429 Query 111851 TGGTATCGG----GATGCACATC-CATGATGTCAGAGCCAACAAGTCTCGTA--TTAGAG 111903 |||||||| | ||| || | ||| | | ||| ||| |||||| || | | Sbjct 428 CGGTATCGGCGTCGCTGCCCACCGCAT-----CCGCGCCTCCAA--CTCGTACATTCGCG 376 Query 111904 GTACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 111963 | || || || || || || | | || ||||| ||||| | |||| ||| || | Sbjct 375 GCACCAACGGCACCTC-GAACGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCC 317 Query 111964 GCTATGTAAACCAAGCTGGGCGT---CGCAAGGGATCTATCGCAGTCTATCTTGAGCCAT 112020 |||| || |||| | || | |||||||| | | || |||| || ||||| | Sbjct 316 GCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTACCTCGAGCCGT 257 Query 112021 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--C 112078 ||||||| || ||| | || || | ||| | ||||| || | |||||| | Sbjct 256 GGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACC 197 Query 112079 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 112138 ||| | ||||| ||||||| || || ||||| || || |||||||||||| | || || Sbjct 196 GCGCT--CGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGA 139 Query 112139 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGT 112198 | | ||| | ||||| ||||| || || || |||| ||||| || | || | Sbjct 138 GTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTG 79 Query 112199 GGGTGAGGAGTTTGA 112213 ||| |||||||||| Sbjct 78 GGGCAAGGAGTTTGA 64 >seq2671 Length=7052 Score = 123 bits (136), Expect = 3e-23 Identities = 183/258 (71%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 102078 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCATGTATTCAAAAGAAAGCGGAT 102137 |||||| || ||||| | |||||| |||| || || | | | ||||| || || Sbjct 3252 GAGAAGGCCCATCTCTTCAATGCCATCGAAACGGTGCCCTCGGTGAAGAAGAAGGCCGAG 3193 Query 102138 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTTGCTGAGCGACTCTTCGC 102193 ||||| ||| ||| | | | || |||| ||||||| ||||| ||| | | Sbjct 3192 TGGGCGATGCGATGGATCAACAAGGAGG-GCGTCGACACCTTTGCCGAGCGCCTCGTTGG 3134 Query 102194 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 102253 || || || ||||| ||||||||||| || |||||||| | || | |||||||| Sbjct 3133 GTTCGCCGCAGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGTTCCATCTTCTGGCTCAA 3074 Query 102254 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 102313 ||| || ||||||||||| || ||| ||||||||||||||| ||| || |||||||| Sbjct 3073 GAAACGCGGTCTCATGCCCGGCCTCGCCTTCTCCAACGAGCTCATCAGCCGCGACGAGGG 3014 Query 102314 ACTCCACCAAGAGTTTGC 102331 || ||| |||||||| Sbjct 3013 CCTGCACGCCGAGTTTGC 2996 >seq8173 Length=3122 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 102172 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 102231 |||| | ||||| ||| ||| || || || ||||| ||||||||||| || || | Sbjct 1686 CCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTT 1627 Query 102232 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 102291 ||||| | || | |||||||||||||| || || ||||| ||||| |||| ||||| Sbjct 1626 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 1567 Query 102292 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 102331 |||||||| || |||||||| || ||| || ||||| Sbjct 1566 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 1527 >seq283 Length=14928 Score = 104 bits (114), Expect = 3e-17 Identities = 95/119 (80%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 102180 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 102239 || || ||| | || ||||| || ||||| |||||||||||||| ||||||||| | Sbjct 2858 GAACGCCTCGTGGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCTGGCTCCTTCTGCTCC 2917 Query 102240 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 102298 || | ||||||||||||||| || |||||||| || ||| ||| ||||||||||| || Sbjct 2918 ATCT-TTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCGCCTTTTCCAACGAGCTCAT 2975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620379273455280