Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq960 203 4e-47 seq18213 143 3e-29 seq21360 120 4e-22 seq283 111 2e-19 seq2671 87.8 2e-12 seq8173 82.4 9e-11 >seq960 Length=8959 Score = 203 bits (224), Expect = 4e-47 Identities = 935/1466 (64%), Gaps = 33/1466 (2%) Strand=Plus/Minus Query 109672 GACCAGAGACCGACCTTTTTGAGATCGT-CAACAAGATGCTTGTTGACCACGACAAATTC 109730 |||||||| ||| | | ||| ||| ||||| | |||| |||||| ||| || || Sbjct 8923 GACCAGAGGCCGCGCAGCTGGAGCTCGCGCAACAGG-TGCTCGTTGACGACGGTGAAGTC 8865 Query 109731 ACCAGCAAGTGTGCGTCGGAGGTAGATGTTAGTCGTGTAGGGTTCGAAACACTCATTGTT 109790 || ||||| |||| || ||||||||| ||||||||||| || || ||||| ||||| Sbjct 8864 GCCGGCAAGGATGCGGCGCGTGTAGATGTTGGTCGTGTAGGGCTCAAAGCACTCGTTGTT 8805 Query 109791 GCCTAGGATTTGTGCAGTGGAAGCTGTGGGCATGGGAGCCATGAGAAGACTGTTTCGGAG 109850 ||| ||||| || | || || || || |||||||| || | ||| || ||| ||||| Sbjct 8804 GCCGAGGATCTGCGAGGTCGAGGCAGTCGGCATGGGCGCGACGAGCAGCGAGTTGCGGAG 8745 Query 109851 ACCCTTC--GTCTTTACCCGCTCACGCATTGCGTCCCAATCATAACGACCACTAAATTTA 109908 || | | | | || | ||| | | |||| || |||| | | | Sbjct 8744 GCCGTGGCGGGCAATGTTGGCGC--GCAGAGTGGCCCAGTCCCAACGGTC-CGACGGGAC 8688 Query 109909 GTCTCACCATCCCACATATCTGGTTGAAGTACACCCTCAGCAGCAGGAGAACCCTTGAAA 109968 | | | |||| | || ||||| || |||| | || || || || | | Sbjct 8687 GACGC-----CCCAGAGGTCGGGTTGCAGCTTGCCCTTCGAGGCCGGCGAGCCGGGGTAG 8633 Query 109969 CTCTCGTACGACCCCTCAACCTCGGCCAACTCGGATGAAGCCTCTAGTGCCGCATGATAC 110028 ||||||| | ||||| |||| ||||| |||| || ||| | || |||| || Sbjct 8632 GTCTCGTAGGTGCCCTCGACCTGGGCCAGCTCGTTCGAGGCCACGCAAGCGGCATAGTAG 8573 Query 110029 ATAGTCTCAAAAATATGAGCATTCATGAG---GCGAGACTCTTCACAGTCGAAGGGAAGA 110085 || |||||||| || | || | |||| ||| | ||| || | || | || | Sbjct 8572 ATGGTCTCAAAGATG-GCGCGGT--TGAGCTCGCGGGCCTCGTCGCTCTCCCACGGGTGG 8516 Query 110086 CCACAAAGAATAAACACATCCGCTAGACCCTGAACACCGAGACCAATGGGGCGATGCTTC 110145 | | || || || || || || ||||| || || | || |||||||| || | Sbjct 8515 CGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACGCCAATGCCGATGGGGCGGTGGCGC 8456 Query 110146 ATGTTAGAGCGTCGAGCAGTTTCTACGGGGTAAAAGTTGCGGTCGATGACCCGATTGAGA 110205 ||| ||| || || || ||||| ||||| |||||| ||| ||||| Sbjct 8455 TGGTTCGAGGTGCGGGCCTCGGGCACCGGGTAGTAGTTGATGTCGATCACCTTGTTGAGG 8396 Query 110206 TTCTTCGTCACAGTCTTCGTGATTTCATGGAGTTTGTCGTAATCGAACGTTTTCGTCTCC 110265 ||||| || || ||| | ||| || || | || ||| ||| | |||| | Sbjct 8395 TTCTTGGTGACGACCTTGACCACGTCAAACAGCTTCTGGTGATCAAAC-TGGCCGTCGAC 8337 Query 110266 TTATTGACATATTTGGGGAGAGCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTG 110325 ||| | ||||| || || || || || || |||||||| | ||||| Sbjct 8336 GA--TGA---ACTTGGGCAGGGCGATCGAGGCCAGGTTGCACACGGCCACTTCGTCGGGC 8282 Query 110326 TCGGTGTATTCCAAAATTTCCGTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTC 110385 |||||| | | | ||||| |||| ||| || || || |||| || || | Sbjct 8281 GAGGTGTACTGGATGACCTCCGTGCACAGGTTCGACGACTGGATCGTGCCCAGGTGCTGC 8222 Query 110386 TGATTCGATTTGGAGTTGCATGCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTC 110445 || ||||| ||| |||||| || ||||| ||||||||||| || || ||||| || || Sbjct 8221 TGGTTCGACTTGCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCAGTCTCGATC 8162 Query 110446 TGTGACTTGAGAATGGCCTTCCATACATCGGCGGCGGGGACAGTTGCGTTAGCGAGACCT 110505 || |||| ||| || || ||| | || ||| ||| | ||| | || Sbjct 8161 TGCGACTCGAGGATCGCAAACCAGAGCTCCTGGGCCTTGACCACCCGGCGGGCGCGGCCC 8102 Query 110506 TCCTCCTCGTACTTGGTGTACAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCC 110565 ||| |||||| ||| |||||||| |||| || || ||| | || || Sbjct 8101 TCCAGCTCGTAGCGCTCATACTTCTCCTCAAACTCCTTGCCCCACGAGTCAAACAGGCCG 8042 Query 110566 TTCGCCTTGTCGGGACAGAAGAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAAC 110625 ||||| || ||| |||||||| ||||| | || || ||| || | ||||||||| Sbjct 8041 GGCGCCTCGTTGGGGCAGAAGAGCGACCAGTCGCCGCCAGACTCGACGCGCTTCATGAAG 7982 Query 110626 AGGTCAGGAATCCACATCGCCG-AGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTG 110684 ||||| || ||||||| |||| |||| ||||| || || ||| || | || || Sbjct 7981 AGGTCGGGGATCCACAG-GCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTG 7923 Query 110685 GTTGAGGCGTAGCTCCAAAAAGTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGC 110744 ||| |||||||||||||| | ||| || | |||||| || |||||||||| || Sbjct 7922 GTTCTTCTTGAGCTCCAAAAAGTCAAAGATGTCGGCGTGCCACGGCTCGAGATAGATGGC 7863 Query 110745 GATGGATCCCTTACG---ACGACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGAC 110801 | || ||||| || | || |||||| || ||||| || ||| | ||| |||| Sbjct 7862 AAAGGCGCCCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGTTGTAGAC 7803 Query 110802 CCTGAGCATAGGAATAATTCCATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATT 110861 | ||||| || | | || | || || || || || | ||| || || Sbjct 7802 GCGCAGCATCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCGCGAATGTACGAGTTGGA 7743 Query 110862 GGCACGAATGTCGTGGATATGCATACCAATACCACCCGCCCACTTACTAATTTGTGCACA 110921 ||| || ||| |||| | | || ||||| || || |||| || | || || Sbjct 7742 GGCGCGGATGCGGTGGGCAGCGACGCCGATACCGCCAGCTGACTTGGAGATGAGGGCGCA 7683 Query 110922 CTCTGTGAGTGTACCATAAATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCA 110981 || |||| || | || ||||| || ||||| || |||| ||| | || ||||| Sbjct 7682 CTGCTTGAGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCA 7623 Query 110982 AGAAGACATCTGAGGACGAGGCGTTCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAA 111041 || || | ||| || || || || || || |||||||| || ||||| || || |||| Sbjct 7622 CGACGAAAGCTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGTGTGGCGTGGGTGAA 7563 Query 111042 CAGACCTTGGGACATCTTGTTGTATGTGTCGAGTGCGGAGGGTACATCTTTACC--GTGA 111099 || ||| || | | || ||| || |||| ||| ||| || || || |||| Sbjct 7562 GAGCTGTTGCGAGAGCAAGTCGTAGGTCTCGATGACGGCGGG--GATGTTGTCCATGTGA 7505 Query 111100 ATACCAATGGCAACTCGCATGAACAT 111125 | ||| | |||||| ||||||| ||| Sbjct 7504 AGACCGACGGCAACACGCATGAGCAT 7479 >seq18213 Length=2148 Score = 143 bits (158), Expect = 3e-29 Identities = 397/602 (66%), Gaps = 10/602 (2%) Strand=Plus/Plus Query 110530 TCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAAGAGG 110589 |||||||| |||| || || ||| | || || ||||| || ||| |||||||| Sbjct 61 TCCTCAAACTCCTTGCCCCACGAGTCAAACAGGCCGGGCGCCTCGTTGGGGCAGAAGAGC 120 Query 110590 GACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGCCG-A 110648 ||||| | || || ||| || | ||||||||| ||||| || ||||||| |||| | Sbjct 121 GACCAGTCGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGGGATCCACAG-GCCGTA 179 Query 110649 GAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAAGTC 110708 ||| ||||| || || ||| || | || ||||| |||||||||||||| Sbjct 180 GAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTGAGCTCCAAAAAGTC 239 Query 110709 CATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCCCTTACG---ACGACC 110765 | ||| || | |||||| || ||||| |||| || | || ||||| || | || Sbjct 240 AAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCCTTGCGCTTGCCGCC 299 Query 110766 CGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTCCATC 110825 |||||| || ||||| || ||| | ||| |||| | ||||| || | | | || Sbjct 300 GCCCTGGTCGACGTAGCGGGCAGTGTCGTTGTAGACGCGCAGCATCGGGACGAGACGTTC 359 Query 110826 GGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATATGCAT 110885 | || || || || || | ||| || || ||| || ||| |||| | | Sbjct 360 GAGGTG-CCGTTGGTGCCGCGAATGTACGAGTTGGAGGCGCGGATGCGGTGGGCAGCGAC 418 Query 110886 ACCAATACCACCCGCCCACTTACTAATTTGTGCACACTCTGTGAGTGTACCATAAATACC 110945 || ||||| || || |||| || | || |||| |||| || | || ||||| Sbjct 419 GCCGATACCGCCAGCTGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGATACC 478 Query 110946 ATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGAGGCGT 111005 || ||||| || |||| ||| | || ||||| || || | ||| || || || || Sbjct 479 CTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCACGACGAAAGCTGTGGGCGGGGGGT 538 Query 111006 TCCCGCATTGAAGAGTGTAGGTGTCGCATGAATGAACAGACCTTGGGACATCTTGTTGTA 111065 || || |||||||| || || || || || |||| || ||| || | | || ||| Sbjct 539 GCCGGCGTTGAAGAGGGTGGGCGTGGCGTGGGTGAAGAGCTGTTGCGAGAGCAAGTCGTA 598 Query 111066 TGTGTCGAGTGCGGAGGGTACATCTTTACC--GTGAATACCAATGGCAACTCGCATGAAC 111123 || |||| ||| ||| || || || ||||| ||| | |||||| ||||||| | Sbjct 599 GGTCTCGATGACGGCGGG--GATGTTGTCCATGTGAAGACCGACGGCAACACGCATGAGC 656 Query 111124 AT 111125 || Sbjct 657 AT 658 >seq21360 Length=1073 Score = 120 bits (132), Expect = 4e-22 Identities = 306/454 (67%), Gaps = 14/454 (3%) Strand=Plus/Minus Query 109407 GCGAAGATAATACATACCCGTTTTGAGACCAGCCTT---CCATGCGTACATATGCATTGA 109463 ||| || || ||||| ||||| ||||| || ||| ||| ||||| | ||||| || Sbjct 980 GCGCAGGTAGTACATGCCCGTCTTGAGGCC---CTTGCGCCAGGCGTAGAAGTGCATCGA 924 Query 109464 AGAGAGTTTGGAAAGTGTCGGACTCTCC-ATAAACAAGTTCATCGACTGAGACTGATCGA 109522 | ||| |||| || | || ||| || || | | ||| | |||||| ||| |||| Sbjct 923 GGTGAGCTTGGCAAACGAGGG-CTCGCCCATGTAGACGTTGAGCGACTGGCTCTGGTCGA 865 Query 109523 TGAATCGACCA-CGATCAGCCGCCATGTCGATGAT-ACACTTTTGGCTAATTTCCCAGAC 109580 || | | | | || || || |||||||||||||| || | | || | | |||| || Sbjct 864 TGTAG-GCCGAGCGGTCGGCGGCCATGTCGATGATGACGCGCTGGGGCAGCT-CCCATAC 807 Query 109581 AGTCTTGTACAAATTCTTGATATCATCGGGAATGTCCACGATGTTTTGAATAGAGCCACC 109640 |||||||| | |||||||| || || || || || ||||| || | ||||| Sbjct 806 CGTCTTGTAGAGCTTCTTGATGTCGTCAGGGATCTCGTCGATGCGCTGGACCGAGCCGTT 747 Query 109641 AGCCTTCACCATGAGATCCTTCATCTCTTTCGACCAGAGACCGACCTTTTTGAGATCGT- 109699 || || | | ||| | || |||||||| ||| | | ||| ||| Sbjct 746 GTGCTGGACGAGCTTGTTCTTGAGCTGCGGGGACCAGAGGCCGCGCAGCTGGAGCTCGCG 687 Query 109700 CAACAAGATGCTTGTTGACCACGACAAATTCACCAGCAAGTGTGCGTCGGAGGTAGATGT 109759 ||||| | |||| |||||| || || || || || || |||| || |||||||| Sbjct 686 CAACAGG-TGCTCGTTGACGACCGTGAAGTCGCCGGCCAGGATGCGGCGCGTGTAGATGT 628 Query 109760 TAGTCGTGTAGGGTTCGAAACACTCATTGTTGCCTAGGATTTGTGCAGTGGAAGCTGTGG 109819 | ||||||||||| || || ||||| |||||||| ||||| || | || || || || | Sbjct 627 TGGTCGTGTAGGGCTCAAAGCACTCGTTGTTGCCGAGGATCTGCGAGGTCGACGCAGTCG 568 Query 109820 GCATGGGAGCCATGAGAAGACTGTTTCGGAGACC 109853 ||||||| || | ||| || ||| ||||| || Sbjct 567 GCATGGGCGCGACGAGCAGCGAGTTGCGGAGGCC 534 >seq283 Length=14928 Score = 111 bits (122), Expect = 2e-19 Identities = 181/258 (70%), Gaps = 7/258 (3%) Strand=Plus/Minus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || ||| | ||||||||| ||| |||||||| || ||| || || Sbjct 3009 GGCAAAGTCGGCATGCATCCCTTCATCTCGACTAATGAGCTCGTTGGAAAAGGCGAGGCC 2950 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 ||||||||||| | ||||| |||| |||||||| || || ||||| |||||||| Sbjct 2949 GGGCATGAGTCCGCGCTTCTTGAGCC-AAAGATGGAGCAGAAGGAGCCAGAGAAGAAGAT 2891 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGAG-----ACTTGTC 119668 |||||| || ||| || || | || || || | || | |||||| |||| | Sbjct 2890 GCCCTCGACGGCGGCAAACGCCACGAGGCGTTCGGGGAATGTGTCGAGTCCCTCCTTGGC 2831 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTC 119728 || ||||||||| ||||| | |||||| |||| | | || || || | |||||| | Sbjct 2830 GATCCACTTGAGCGCCCACTCGGCCTTGCGCTTGACCGACGGCACGGTCTCGATGGCGTT 2771 Query 119729 GAAAAGTTGCTTCTTTTC 119746 ||| || || ||||| || Sbjct 2770 GAAGAGGTGGTTCTTCTC 2753 >seq2671 Length=7052 Score = 87.8 bits (96), Expect = 2e-12 Identities = 202/303 (67%), Gaps = 6/303 (2%) Strand=Plus/Plus Query 119495 GGCAAATTCTTGATGAAGCCCTTCATCCCGAGAGATGAGCTCATTACTGAAGCAAAGTCC 119554 |||||| || || || || || || || ||||||||| || |||| || || Sbjct 2995 GGCAAACTCGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCC 3054 Query 119555 AGGCATGAGTCCTCTTTTCTTTAGCCAAAAGATGGCACAAAAACTTCCAGAAAAGAAGAT 119614 |||||||| || | |||||| ||||| ||||||| ||| || || || |||||||| Sbjct 3055 GGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGAT 3114 Query 119615 GCCCTCCACACAGGCGAAAGCGAATAGACGCTCAGCAAAAG-GTCGA-----GACTTGTC 119668 |||||| || |||||| | | || ||||| ||||| | ||||| ||||| Sbjct 3115 GCCCTCGACTGCGGCGAACCCAACGAGGCGCTCGGCAAAGGTGTCGACGCCCTCCTTGTT 3174 Query 119669 GAACCACTTGAGAGCCCAGTTGGCCTTACGCTCTATGCAGGGGACAGTTTGGATGGCTTC 119728 || ||| | ||||| | |||||| || | |||| || |||| |||||| | Sbjct 3175 GATCCATCGCATCGCCCACTCGGCCTTCTTCTTCACCGAGGGCACCGTTTCGATGGCATT 3234 Query 119729 GAAAAGTTGCTTCTTTTCAGCACCATCCTTAATATATTTATCAATGAGTTTAGAGTAGGT 119788 ||| || || ||| || | ||||| | || |||| | ||| |||||||| Sbjct 3235 GAAGAGATGGGCCTTCTCGACGGGGTCCTTGACGTAGGTATCCAGGAGGAGCGAGTAGGT 3294 Query 119789 CTC 119791 ||| Sbjct 3295 CTC 3297 >seq8173 Length=3122 Score = 82.4 bits (90), Expect = 9e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Plus Query 119528 GATGAGCTCATTACTGAAGCAAAGTCCAGGCATGAGTCCTCTTTTCTTTAGCCAAAAGAT 119587 ||| ||||| || |||||| ||| || ||||| || || | ||||| ||||| ||||| Sbjct 1559 GATAAGCTCGTTGCTGAAGGCAAGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGAT 1618 Query 119588 GGCACAAAAACTTCCAGAAAAGAAGATGCCCTCCACACAGGCGAAAGCGAATAGACGCTC 119647 || || ||| || || |||||||||||||| || |||||| ||| |||||||| Sbjct 1619 GGAGCAGAAAGAGCCGGAGAAGAAGATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTC 1678 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588631456402200