Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_014789.1 Length=184409 Score E Sequences producing significant alignments: (Bits) Value seq960 219 5e-52 seq18213 150 2e-31 seq2671 111 2e-19 seq283 91.5 2e-13 seq8173 82.4 9e-11 >seq960 Length=8959 Score = 219 bits (242), Expect = 5e-52 Identities = 578/872 (66%), Gaps = 23/872 (3%) Strand=Plus/Minus Query 106452 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 106511 |||| || |||||||| || |||| ||||| || ||| || || ||||||| Sbjct 8331 ACTTGGGCAGGGCGATCGAGGCCAGGTTGCACACGGCCACTTCGTCGGGCGAGGTGTACT 8272 Query 106512 CTAAAATTTCTGTACACAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 106571 | | || || |||| ||| || || ||||| |||| | || ||||| || Sbjct 8271 GGATGACCTCCGTGCACAGGTTCGACGACTGGATCGTGCCCAGGTGCTGCTGGTTCGACT 8212 Query 106572 TTTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGACTTGA 106631 | ||||||| || ||||||||||||||||||||||| || ||||| |||| |||| || Sbjct 8211 TGCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCAGTCTCGATCTGCGACTCGA 8152 Query 106632 GAATTGCCTTCCACACATCGGCGGCTGGTACAAT--GGCGTTGGCCCGTCCCTCCGCCTC 106689 | || || ||| | || ||| || | |||| ||| || |||||| ||| Sbjct 8151 GGATCGCAAACCAGAGCTCCTGGGCCTTGACCACCCGGCG--GGCGCGGCCCTCCAGCTC 8094 Query 106690 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 106749 ||| || | |||||||||| ||| || ||| | || || || |||| Sbjct 8093 GTAGCGCTCATACTTCTCCTCAAACTCCTTGCCCCACGAGTCAAACAGGCCGGGCGCCTC 8034 Query 106750 GTCTGGACAGAAAAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGG 106809 || || ||||| || ||||| | || || ||| || ||||||||||| ||||| || Sbjct 8033 GTTGGGGCAGAAGAGCGACCAGTCGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGG 7974 Query 106810 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 106869 ||||||||| | ||||| || | | || ||| || | || ||||| || Sbjct 7973 GATCCACAGGCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCT-TCT 7915 Query 106870 TAA-CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 106928 | | ||| | || || | ||| || |||||||| ||||| ||||||| || | | | Sbjct 7914 TGAGCTCCAAAAAGTCAAAGATGTCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGC 7855 Query 106929 CCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 106985 |||| || ||| | | || | || ||||| || ||| |||| | ||||| |||| Sbjct 7854 CCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGTTGTAGACGCGCAGCA 7795 Query 106986 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCT 107043 | || | | ||| | || || || || || ||||| ||||| | | ||| | Sbjct 7794 TCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCGCGAATGTACGAGTTGGA--GGCGCG 7737 Query 107044 CACATCATG-GATGTGCATC----CCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 107098 | || | || ||| | || ||||| ||||| |||| ||||| | || ||| Sbjct 7736 GA-----TGCGGTGGGCAGCGACGCCGATACCGCCAGCTGACTTGGAGATGAGGGCGCAC 7682 Query 107099 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 107158 | | | || || | |||||||| | ||| ||||||||||| ||| || |||||||| Sbjct 7681 TGCTTGAGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCAC 7622 Query 107159 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 107218 || | |||||| | || || || || ||||||||||| ||||| ||||| |||| Sbjct 7621 GACGAAAGCTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGTGTGGCGTGGGTGAAG 7562 Query 107219 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 107278 | ||| || | | |||||| ||||| | ||| | |||| ||| ||| | Sbjct 7561 AGCTGTTGCGAGAGCAAGTCGTAGGTCTCGATGACGGCGGGGATGTTGTCCATGTGAAGA 7502 Query 107279 CCGATGGCCACACGCATAAACATGTATTGGGG 107310 |||| ||| |||||||| | ||||| ||||| Sbjct 7501 CCGACGGCAACACGCATGAGCATGTGCTGGGG 7470 >seq18213 Length=2148 Score = 150 bits (166), Expect = 2e-31 Identities = 407/613 (66%), Gaps = 20/613 (3%) Strand=Plus/Plus Query 106709 TCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC 106768 |||||||||| ||| || ||| | || || || |||| || || ||||| || ||| Sbjct 64 TCAAACTCCTTGCCCCACGAGTCAAACAGGCCGGGCGCCTCGTTGGGGCAGAAGAGCGAC 123 Query 106769 CATTGACCACCCTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 106828 || | || || ||| || ||||||||||| ||||| || ||||||||| | ||| Sbjct 124 CAGTCGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAG 183 Query 106829 AGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA-CTCAAGGAACTCCAT 106887 || || | | || ||| || | || ||||| || | | ||| | || || | Sbjct 184 AGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCT-TCTTGAGCTCCAAAAAGTCAAA 242 Query 106888 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGC 106944 ||| || |||||||| ||||| || |||| || | | ||||| || ||| | | Sbjct 243 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 302 Query 106945 TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGA 107004 || | || ||||| || ||| |||| | ||||| ||||| || | | || || Sbjct 303 CTGGTCGACGTAGCGGGCAGTGTCGTTGTAGACGCGCAGCATCGGGACGAGACGTTCGAG 362 Query 107005 TTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATG-GATGTGCAT 107061 || || || || || ||||| ||||| | | ||| | | || | || ||| Sbjct 363 GTG-CCGTTGGTGCCGCGAATGTACGAGTTGGA--GGCGCGGA-----TGCGGTGGGCAG 414 Query 107062 C----CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGA 107117 | || ||||| ||||| |||| ||||| | || |||| | | || || | |||| Sbjct 415 CGACGCCGATACCGCCAGCTGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGA 474 Query 107118 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 107177 |||| | ||| ||||||||||| ||| || |||||||| || | ||| || | | Sbjct 475 TACCCTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCACGACGAAAGCTGTGGGCGGG 534 Query 107178 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGT 107237 | || || || ||||||||||| || || ||||| |||| | ||| || | | || Sbjct 535 GGGTGCCGGCGTTGAAGAGGGTGGGCGTGGCGTGGGTGAAGAGCTGTTGCGAGAGCAAGT 594 Query 107238 CGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATGGCCACACGCATAA 107297 |||| ||||| | ||| | |||| ||| ||| | |||| ||| |||||||| | Sbjct 595 CGTAGGTCTCGATGACGGCGGGGATGTTGTCCATGTGAAGACCGACGGCAACACGCATGA 654 Query 107298 ACATGTATTGGGG 107310 ||||| ||||| Sbjct 655 GCATGTGCTGGGG 667 >seq2671 Length=7052 Score = 111 bits (122), Expect = 2e-19 Identities = 168/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 117273 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCC 117332 ||||||||| ||| || ||||| || ||| || || || || |||||| ||||| Sbjct 2995 GGCAAACTCGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCC 3054 Query 117333 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 117392 ||||||||||| || ||||| | ||| | || | ||||| || || ||||||||||| Sbjct 3055 GGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGAT 3114 Query 117393 ACCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGGAG-CGA--GACTTTGTGTC 117449 ||||| || || ||| ||| ||||||||||| |||| | ||| || ||| Sbjct 3115 GCCCTCGACTGCGGCGAACCCAACGAGGCGCTCGGCAAAGGTGTCGACGCCCTCCTTGTT 3174 Query 117450 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 117506 | |||| ||| ||||| | |||||||||| | | || || |||| |||||| Sbjct 3175 GATCCATCGCATCGCCCACTCGGCCTTCTTCTTCACCGAGGGCACCGTTTCGATGGC 3231 >seq283 Length=14928 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 117292 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCTGGCATGAGACCCCGCTTC 117351 || |||||||| ||| || || || || ||| ||||| |||||||| || |||||| Sbjct 2990 CCTTCATCTCGACTAATGAGCTCGTTGGAAAAGGCGAGGCCGGGCATGAGTCCGCGCTTC 2931 Query 117352 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 117411 || | |||| | || | |||||| || || ||||||||||| ||||| || |||||| Sbjct 2930 TTGAGCCAA-AGATGGAGCAGAAGGAGCCAGAGAAGAAGATGCCCTCGACGGCGGCAAAC 2872 Query 117412 GCAAAAAGGCGCTCGGCGAA 117431 || | ||||| |||| ||| Sbjct 2871 GCCACGAGGCGTTCGGGGAA 2852 >seq8173 Length=3122 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 117274 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGGCCT 117333 ||||| || ||| |||||||| || ||| ||||| || || |||| || || Sbjct 1527 GCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGACCG 1586 Query 117334 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 117393 ||||| || || |||||||| | ||| | || | |||||| || |||||||||||||| Sbjct 1587 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATG 1646 Query 117394 CCCTCCACACACGCAAACGCAAAAAGGCGCTCGGCGAAGG 117433 ||||| || || || | | || ||||||| ||||| Sbjct 1647 CCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGG 1686 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 589635668606760