Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_019406.1 Length=279967 Score E Sequences producing significant alignments: (Bits) Value seq40243 100 5e-16 seq6229 100 5e-16 >seq40243 Length=371 Score = 100 bits (110), Expect = 5e-16 Identities = 94/120 (78%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 168522 CCGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGCCGAGTTCGTCCTTC 168581 ||||| |||||| | |||||||||||||| || || |||||||| || ||| |||| Sbjct 250 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 191 Query 168582 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGAAGTGGCGTTCCTTG 168641 | || ||||||||||||||| |||||||| | ||||| ||| |||||| | ||| || Sbjct 190 CGGGCGCTCACCGCGCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGGTGCTCCCTG 131 >seq6229 Length=2774 Score = 100 bits (110), Expect = 5e-16 Identities = 272/423 (64%), Gaps = 55/423 (13%) Strand=Plus/Plus Query 168273 CCCTTGACGCACAACACCTGCTTGAGGGTGGCGACGATCTCCACCATTTCTTCCTGGGCC 168332 ||||||||||| | ||||||||||||||| |||| || || | || |||||| Sbjct 276 CCCTTGACGCAAAGGACCTGCTTGAGGGTGTGCACGACTTCGACGAGATCGGTTTGGGCC 335 Query 168333 GCCATGACGAGTTCGATCGGCTTGTAAGCCTTCGGCGTCTCGTCGATCACGCCTTCGTCC 168392 ||||||| ||||| |||||| || ||||| ||||| | | | | |||| Sbjct 336 TGCATGACGGCGTCGATGTCCTTGTACGCTCGAGGCGTTTCGTCCAGGAGGTCGGCGTCA 395 Query 168393 TTGCGGCACTCGACGCCCTTCGTGGCTTCGACGTGCTCGTCCAGGGAGACGAGCTTCTTC 168452 | || ||||||||||| |||| | | | ||| || || || | || |||| ||| Sbjct 396 TGTCGACACTCGACGCCACGCGTGTCATGCAGGTGGTCCTCGAGCGTGAAGAGCCGCTTA 455 Query 168453 GCCGCCGAACGCGACATG-ACGCGGCCGGCGCCGTGGCTGCAC----------------- 168494 || ||| ||||| ||| ||||| ||||| ||||||||||| Sbjct 456 GCTGCCCCGCGCGA-ATGCACGCGCCCGGCTCCGTGGCTGCAGCTGTGGAAACTCTCGGC 514 Query 168495 --------------GAGC---------AGAAGGC---------GTCA--GCGTGGCCCTT 168520 |||| ||| ||| |||| || |||| | Sbjct 515 ATTGCCCCGTCCTAGAGCCAGAAAGTGAGATGGCTGAGCTCAAGTCAAAGCCTGGCGCAC 574 Query 168521 GC--CGCGCACGATGAACGACTTGGCGCCCATCGAACCCGGAATGATGCCGAGTTCGTCC 168578 || |||| |||||| | |||||||||||||| || || |||||||| || ||| || Sbjct 575 GCACCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCC 634 Query 168579 TTCTGCGCCGACACCGCGCCCTTGCGGGTCACGAAGATGTCCTCGCCGAAGTGGCGTTCC 168638 || | || ||||||||||||||| |||||||| | ||||| ||| |||||| | ||| Sbjct 635 TTGCGGGCGCTCACCGCGCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGGTGCTCC 694 Query 168639 TTG 168641 || Sbjct 695 CTG 697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 895242387853080