Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_019408.1 Length=223720 Score E Sequences producing significant alignments: (Bits) Value seq40243 95.1 2e-14 seq6229 95.1 2e-14 seq11585 87.8 3e-12 >seq40243 Length=371 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 139632 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACTGGTCCTTC 139691 ||||| ||||||||| ||||| ||||||||||| ||||||||||| | || | |||| Sbjct 250 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 191 Query 139692 TGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAACTCC 139748 | || ||||||||||||||| |||||||| || || | | |||||| |||| Sbjct 190 CGGGCGCTCACCGCGCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGGTGCTCC 134 >seq6229 Length=2774 Score = 95.1 bits (104), Expect = 2e-14 Identities = 91/117 (78%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 139632 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATGCCGAACTGGTCCTTC 139691 ||||| ||||||||| ||||| ||||||||||| ||||||||||| | || | |||| Sbjct 578 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 637 Query 139692 TGAGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGGAACTCC 139748 | || ||||||||||||||| |||||||| || || | | |||||| |||| Sbjct 638 CGGGCGCTCACCGCGCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGGTGCTCC 694 Score = 84.2 bits (92), Expect = 3e-11 Identities = 98/131 (75%), Gaps = 6/131 (5%) Strand=Plus/Plus Query 140262 GGCCCGCCGTGCGGGACGGCGTGCTCGAT---CAGCGAGCGCAGCTTGGCGAGGCTGTCG 140318 ||| | || || |||| ||| || ||||| |||| | || ||||| |||||| | Sbjct 1405 GGCGCACCATGGGGGATGGCCTGTTCGATGGCCAGCCTGAGCGGCTTG---AGGCTGGCA 1461 Query 140319 GGCAGGTCCGAGGCCTTCAGCGAGGTGCGCACGGCCATCATGCCGCAGCCGATGTCCACG 140378 ||||| || ||||| |||| |||||| ||| ||||||||||| || ||||||||| Sbjct 1462 GGCAGATCGGAGGCTGTCAGGCTGGTGCGGGAGGCGATCATGCCGCAACCAATGTCCACG 1521 Query 140379 CCCACGGCCGC 140389 |||||||| || Sbjct 1522 CCCACGGCTGC 1532 >seq11585 Length=1351 Score = 87.8 bits (96), Expect = 3e-12 Identities = 95/125 (76%), Gaps = 6/125 (5%) Strand=Plus/Minus Query 140268 CCGTGCGGGACGGCGTGCTCGAT---CAGCGAGCGCAGCTTGGCGAGGCTGTCGGGCAGG 140324 || || |||| ||| || ||||| |||| | || ||||| |||||| ||||||| Sbjct 781 CCATGGGGGATGGCCTGTTCGATGGCCAGCCGGAGCGGCTTG---AGGCTGGCGGGCAGA 725 Query 140325 TCCGAGGCCTTCAGCGAGGTGCGCACGGCCATCATGCCGCAGCCGATGTCCACGCCCACG 140384 || ||||| |||| |||||| ||| ||||||||||| || ||||||||||||||| Sbjct 724 TCGGAGGCTGTCAGGCTGGTGCGGGAGGCGATCATGCCGCAACCAATGTCCACGCCCACG 665 Query 140385 GCCGC 140389 || || Sbjct 664 GCTGC 660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 715357279987200