Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_019410.1 Length=221828 Score E Sequences producing significant alignments: (Bits) Value seq40243 87.8 3e-12 seq6229 87.8 3e-12 seq11585 86.0 9e-12 >seq40243 Length=371 Score = 87.8 bits (96), Expect = 3e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 137456 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTC 137515 ||||| ||||||||| ||||| ||||||||||| |||||||| || | || | |||| Sbjct 250 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 191 Query 137516 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGG 137566 | || ||||||||||||||| |||||||| || || | | |||||| Sbjct 190 CGGGCGCTCACCGCGCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGG 140 >seq6229 Length=2774 Score = 87.8 bits (96), Expect = 3e-12 Identities = 86/111 (77%), Gaps = 0/111 (0%) Strand=Plus/Plus Query 137456 CCGCGCACGATGTAGGACTTGGCCCCCATCGAGCCGGGGATGATCCCGAACTGGTCCTTC 137515 ||||| ||||||||| ||||| ||||||||||| |||||||| || | || | |||| Sbjct 578 CCGCGGACGATGTAGCTTTTGGCGCCCATCGAGCCAGGGATGATGCCCAGCTCGCCCTTG 637 Query 137516 TGCGCCGACACCGCGCCCTTGCGGGTCACGAAGACCCACTCGTCGAAGTGG 137566 | || ||||||||||||||| |||||||| || || | | |||||| Sbjct 638 CGGGCGCTCACCGCGCCCTTGCGCGTCACGAACACGTCCTTGCCAAAGTGG 688 >seq11585 Length=1351 Score = 86.0 bits (94), Expect = 9e-12 Identities = 97/127 (76%), Gaps = 10/127 (8%) Strand=Plus/Minus Query 138092 CCGTGCGGGACGGCGTGCTCGAT---CAGC--GAGCGAAGCTTGGACAGGCTGTCGGGGA 138146 || || |||| ||| || ||||| |||| ||||| ||||| |||||| |||| | Sbjct 781 CCATGGGGGATGGCCTGTTCGATGGCCAGCCGGAGCG--GCTTG---AGGCTGGCGGGCA 727 Query 138147 GGTCCGACGCGGTCAGGCTGGTGCGGACCGCCATCATGCCGCAGCCGATGTCGACGCCGA 138206 | || || || ||||||||||||||| || ||||||||||| || ||||| ||||| | Sbjct 726 GATCGGAGGCTGTCAGGCTGGTGCGGGAGGCGATCATGCCGCAACCAATGTCCACGCCCA 667 Query 138207 CGGCGGC 138213 |||| || Sbjct 666 CGGCTGC 660 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 709306421735520