Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq29120 111 1e-18 seq1509 111 1e-18 seq197 95.1 8e-14 seq11817 89.7 3e-12 seq32327 87.8 1e-11 seq9462 87.8 1e-11 seq11743 86.0 4e-11 seq1504 86.0 4e-11 >seq29120 Length=1147 Score = 111 bits (122), Expect = 1e-18 Identities = 229/341 (67%), Gaps = 0/341 (0%) Strand=Plus/Plus Query 877922 AATATCACTAAAAACATGGAACAAGCCTTTTACGATGAAATTCGTGTCATGACTAAACTC 877981 || ||||| || ||||||| | ||| | || || | || || ||||| || Sbjct 253 AAGATCACCAAGGACATGGAGAAGAGCTTCCAGGACGAGGTGCGCGTGATGACGTCGCTG 312 Query 877982 CGTCATCCAAATGTTGTGTTATTTATGGCTGCTTGCACAAAACCTCCCAAAATGTGTATT 878041 || || || || || || | || ||||| || | || || || ||||| ||||| || Sbjct 313 CGCCACCCGAACGTCGTCCTCTTCATGGCAGCCTCGACCAAGCCGCCCAAGATGTGCATC 372 Query 878042 ATCATGGAGCACATGTCACTTGGGTCAATGTATGAACTTTTAGAAAATGAACTTATTCCA 878101 |||||||| ||| | || || || | || || || | | ||||| || ||||| Sbjct 373 GTCATGGAGTTTATGGCTCTCGGCTCCCTCTACGACCTCCTCCACAATGAGCTCATTCCC 432 Query 878102 GATATTCCTCTAGAACTTAAAATTAAGATGGCATATCAAGCATCTAAAGGAATGCATTTC 878161 || ||||| | | || || |||||||| || || || || || || ||||| ||| Sbjct 433 GAGATTCCGTTCGTGCTCAAGGCCAAGATGGCCTACCAGGCGTCCAAGGGCATGCACTTC 492 Query 878162 TTACACTCATCCGGCATTGTCCATAGAGATCTCAAGTCTCTTAATCTACTACTAGATTCT 878221 | ||||| || ||||| ||||| | ||||||||||| || || || || || || Sbjct 493 CTCCACTCGTCGGGCATCGTCCACCGCGATCTCAAGTCGCTCAACCTGCTGCTGGACAAC 552 Query 878222 AAATGGAATGTTAAAGTGAGTGATTTTGGTTTGACAAAGTT 878262 || ||||| || || ||| || ||||| | || ||||| Sbjct 553 AAGTGGAACGTCAAGGTGTCCGACTTTGGCCTCACCAAGTT 593 >seq1509 Length=6559 Score = 111 bits (122), Expect = 1e-18 Identities = 178/256 (70%), Gaps = 0/256 (0%) Strand=Plus/Minus Query 877962 TTCGTGTCATGACTAAACTCCGTCATCCAAATGTTGTGTTATTTATGGCTGCTTGCACAA 878021 |||| || ||||| || || || || ||||| ||| | || ||||| || | || | Sbjct 982 TTCGCGTGATGACGTCGCTTCGCCACCCGAATGTGGTGCTGTTCATGGCCGCGTCGACCA 923 Query 878022 AACCTCCCAAAATGTGTATTATCATGGAGCACATGTCACTTGGGTCAATGTATGAACTTT 878081 || | ||||| ||||| || |||||||| |||| | ||||| || | | || || Sbjct 922 AAGCGCCCAAGATGTGCATCGTCATGGAGTTCATGGCGCTTGGCTCGCTCTTCGACCTGC 863 Query 878082 TAGAAAATGAACTTATTCCAGATATTCCTCTAGAACTTAAAATTAAGATGGCATATCAAG 878141 | | || || || ||||| || ||||| | | || || |||||||| || || | Sbjct 862 TCCACAACGAGCTCATTCCCGACATTCCATTCGCGCTCAAGGCCAAGATGGCCTACCAGG 803 Query 878142 CATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCATAGAGATCTCAAGTCTC 878201 | || || || ||||| ||| | ||||| || || || |||||| | ||||||||||| | Sbjct 802 CGTCCAAGGGCATGCACTTCCTGCACTCGTCGGGTATCGTCCATCGCGATCTCAAGTCGC 743 Query 878202 TTAATCTACTACTAGA 878217 | || || || || || Sbjct 742 TCAACCTTCTCCTCGA 727 >seq197 Length=6321 Score = 95.1 bits (104), Expect = 8e-14 Identities = 103/137 (75%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| |||| ||||| || || || || ||||| ||||| |||||||||||||| || ||| Sbjct 5147 AAGGTGGCCTATCAGGCGTCAAAGGGCATGCACTTCTTGCACTCATCCGGCATCGTGCAT 5206 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 | || ||||||||||| || || || || || | || ||||| || || || || Sbjct 5207 CGCGACCTCAAGTCTCTCAACCTCCTCCTCGACGCCAAGTGGAACGTCAAGGTCTCCGAC 5266 Query 878246 TTTGGTTTGACAAAGTT 878262 ||||| |||| ||||| Sbjct 5267 TTTGGCCTGACCAAGTT 5283 >seq11817 Length=2075 Score = 89.7 bits (98), Expect = 3e-12 Identities = 103/139 (74%), Gaps = 0/139 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||||| | ||||| ||| | || || ||||| ||| | || || || ||||| || || Sbjct 1209 AAGATCGGCTATCAGGCAGCCAAGGGCATGCACTTCCTGCATTCCTCGGGCATCGTGCAC 1268 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAAAGTGAGTGAT 878245 ||||||||||||| || || || || || ||||| || ||||| | || ||||| ||| Sbjct 1269 CGAGATCTCAAGTCCCTCAACCTCCTGCTTGATTCCAAGTGGAACGCCAAGGTGAGCGAT 1328 Query 878246 TTTGGTTTGACAAAGTTTA 878264 || || | || ||||||| Sbjct 1329 TTCGGCCTCACCAAGTTTA 1347 >seq32327 Length=725 Score = 87.8 bits (96), Expect = 1e-11 Identities = 131/185 (71%), Gaps = 6/185 (3%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || || || || || | | | || || || ||||| ||||| || || | ||||| Sbjct 670 TTGTACTCGGCGAGCGTGCGGCTCTCCTCGAGCTGCTTGCCAGCGAAGATCAAGCGTTGC 611 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || || |||||||||||||||||||| || | ||| || ||||| ||||| || | || Sbjct 610 TGGTCGGGAGGAATTCCTTCCTTGTCCTGCAGCTTGTGCTTGACGGCTTCGATGGAGTCG 551 Query 480714 GTGTGTGAAGT---TTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTGG 480770 | | ||| | || ||||| || | || |||||||| ||||| | ||| || || Sbjct 550 GAG---GAACTCACCTCCAGGGTGATGGACTTGCCGGTGAGGGTCTTGATGAAGATCTGC 494 Query 480771 AACGA 480775 | ||| Sbjct 493 ATCGA 489 >seq9462 Length=4292 Score = 87.8 bits (96), Expect = 1e-11 Identities = 214/322 (66%), Gaps = 2/322 (1%) Strand=Plus/Minus Query 879950 GTTGCTGATTTTGGTTTTGCCAGGATTAAAGCGGAAAATACTACTATGACAAGATGTGGT 880009 || ||||| ||||| ||||| |||| || | ||| || | || ||||| | ||||| Sbjct 2930 GTGGCTGACTTTGGCTTTGCGCGGATCAAGGAGGAGAACGCGACCATGACTCGCTGTGGC 2871 Query 880010 ACTCCTTGTTGGACTGCTCCAGAAATCATTCGTGGTGAAAAATATGACGAAAAGACCGAT 880069 || || || |||||||| || || | || ||||| || || |||||||| | | ||| Sbjct 2870 ACGCCCTGCTGGACTGCGCCTGAGGTGATCCGTGGCGAGAAGTATGACGAGCGGGCTGAT 2811 Query 880070 GTATTTTCATTTGGTATTGTTATGTGGGAAGTATTAACTGGTAAAGAACCTTTTGCAGGA 880129 | || || || || || ||||||||||||| | || || | |||| ||| ||| Sbjct 2810 CTCTTCTCCTTCGGCATCATTATGTGGGAAGTTCTCACCCGTCGTCAGCCTTATGCTGGA 2751 Query 880130 TATAATTTTATGAAAGTTTCTCTTGATATCTTGGAAGGCGCAAGACCTCAAATACCTTCT 880189 || || ||| || || |||||| | | || || | ||||| || || | Sbjct 2750 CGCAACTTCATGGGCGTCTCGCTTGATGTGCTCGAGGGACGTCGGCCTCAGATCCCCGCC 2691 Query 880190 GATTGTCC-CATTAATCTAAAGAAACTCATTAAAAAGTGTTGGCACTCAAATGCGAACAA 880248 || || || || | | ||| | |||| || ||||| |||||| ||| | | || Sbjct 2690 GACTGCCCTGATCACTTCAAACGCA-TCATGAAGAAGTGCTGGCACGGAAAGCCAGAGAA 2632 Query 880249 GAGACCTAGCATGGAAGAAGTG 880270 | | || ||||||||| ||| Sbjct 2631 GCGTCCCTCCATGGAAGATGTG 2610 >seq11743 Length=812 Score = 86.0 bits (94), Expect = 4e-11 Identities = 212/319 (66%), Gaps = 2/319 (1%) Strand=Plus/Plus Query 879953 GCTGATTTTGGTTTTGCCAGGATTAAAGCGGAAAATACTACTATGACAAGATGTGGTACT 880012 ||||| ||||| ||||| |||| || | ||| || | || ||||| | ||||| || Sbjct 2 GCTGACTTTGGCTTTGCGCGGATCAAGGAGGAGAACGCGACCATGACTCGCTGTGGCACG 61 Query 880013 CCTTGTTGGACTGCTCCAGAAATCATTCGTGGTGAAAAATATGACGAAAAGACCGATGTA 880072 || || |||||||| || || | || ||||| || || |||||||| | | ||| | Sbjct 62 CCCTGCTGGACTGCGCCTGAGGTGATCCGTGGCGAGAAGTATGACGAGCGGGCTGATCTC 121 Query 880073 TTTTCATTTGGTATTGTTATGTGGGAAGTATTAACTGGTAAAGAACCTTTTGCAGGATAT 880132 || || || || || ||||||||||||| | || || | |||| ||| ||| Sbjct 122 TTCTCCTTCGGCATCATTATGTGGGAAGTTCTCACCCGTCGTCAGCCTTATGCTGGACGC 181 Query 880133 AATTTTATGAAAGTTTCTCTTGATATCTTGGAAGGCGCAAGACCTCAAATACCTTCTGAT 880192 || || ||| || || |||||| | | || || | ||||| || || | || Sbjct 182 AACTTCATGGGCGTCTCGCTTGATGTGCTCGAGGGACGTCGGCCTCAGATCCCCGCCGAC 241 Query 880193 TGTCC-CATTAATCTAAAGAAACTCATTAAAAAGTGTTGGCACTCAAATGCGAACAAGAG 880251 || || || | | ||| | |||| || ||||| |||||| ||| | | ||| | Sbjct 242 TGCCCTGATCACTTCAAACGCA-TCATGAAGAAGTGCTGGCACGGAAAGCCAGAGAAGCG 300 Query 880252 ACCTAGCATGGAAGAAGTG 880270 || ||||||||| ||| Sbjct 301 TCCCTCCATGGAAGATGTG 319 >seq1504 Length=3700 Score = 86.0 bits (94), Expect = 4e-11 Identities = 85/110 (77%), Gaps = 0/110 (0%) Strand=Plus/Plus Query 878126 AAGATGGCATATCAAGCATCTAAAGGAATGCATTTCTTACACTCATCCGGCATTGTCCAT 878185 ||| |||| ||||| || || || || ||||| ||||| |||||||||||||| || ||| Sbjct 3442 AAGGTGGCCTATCAGGCGTCAAAGGGCATGCACTTCTTGCACTCATCCGGCATCGTGCAT 3501 Query 878186 AGAGATCTCAAGTCTCTTAATCTACTACTAGATTCTAAATGGAATGTTAA 878235 | || ||||||||||| || || || || || | || ||||| || || Sbjct 3502 CGCGACCTCAAGTCTCTCAACCTCCTCCTCGACGCCAAGTGGAACGTCAA 3551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3266171763821252