Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq960 181 1e-40 seq18213 156 5e-33 seq2671 111 2e-19 seq283 91.5 2e-13 seq8173 82.4 9e-11 >seq960 Length=8959 Score = 181 bits (200), Expect = 1e-40 Identities = 571/872 (65%), Gaps = 21/872 (2%) Strand=Plus/Plus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||||| || || |||| | ||| ||| |||| | || Sbjct 7469 CCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGT 7528 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | | ||||| |||||| | | || ||| | |||| ||||| ||||| |||||||| Sbjct 7529 CATCGAGACCTACGACTTGCTCTCGCAACAGCTCTTCACCCACGCCACACCGACCCTCTT 7588 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || || | |||||| | || |||||||| || ||| |||||||| Sbjct 7589 CAACGCCGGCACCCCCCGCCCGCAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGA 7648 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| | |||||||| | || || | | |||| || | ||||| |||| ||||| Sbjct 7649 CTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGG 7708 Query 75451 GGGTATTGG----GATGCACATC-CATGATGTGAGAGCCAATAAATCTCGT--ATTCGGG 75503 ||||| || | ||| || | || | | ||| | | ||||| ||||| | Sbjct 7709 CGGTATCGGCGTCGCTGCCCACCGCA-----TCCGCGCC--TCCAACTCGTACATTCGCG 7761 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || || || | ||| | | || ||||| ||||| | |||| ||| || | Sbjct 7762 GCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCC 7821 Query 75564 GCTATGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 |||| || | || |||| ||| |||||||| || | || |||| | || || | Sbjct 7822 GCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTATCTCGAGCCGT 7881 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGACGAAGAGGCT 75679 |||| ||||| ||| | || || | ||| | | || ||||| || | || ||| Sbjct 7882 GGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGA-AGAACCACGGCAAGGAGGAGAAC 7940 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | | || ||||| | ||||||||| || ||||| ||||||||||| || ||| Sbjct 7941 CGCGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAG 8000 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 || || | ||||| || ||||| || || |||| || || || | ||| || | Sbjct 8001 TCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTGG 8060 Query 75800 GGTGAGGAGTTTGAAGCCCTCTACACAAAGTATGAAGAGGAGGGTAGAGCCAATGCGACT 75859 || |||||||||| | || || || |||||| | ||| || | Sbjct 8061 GGCAAGGAGTTTGAGGAGAAGTATGAGCGCTACGAGCTGGAGGGCCGCGCC-CGCCGGGT 8119 Query 75860 GTACCA-GCCGCCGATGTTTGGAAGGCTATTCTCAAATCACAGACGGAGACTGGAACACC 75918 | | | ||| || | ||| || || ||| | || |||| |||||||| || || Sbjct 8120 GGTCAAGGCCCAGGAGCTCTGGTTTGCGATCCTCGAGTCGCAGATCGAGACTGGCACGCC 8179 Query 75919 ATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACAAT 75978 || ||||| |||||||| || || |||| ||| ||||| || | |||| || || Sbjct 8180 CTACATGCTCTACAAGGACGCCTGCAACAGCAAGTCGAACCAGCAGCACCTGGGCACGAT 8239 Query 75979 CAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCTGT 76038 | || || || || |||||||| | | ||||||| || || ||| || Sbjct 8240 CCAGTCGTCGAACCTGTGCACGGAGGTCATCCAGTACACCTCGCCCGACGAAGTGGCCGT 8299 Query 76039 TTGCAATTTGGCATCAATCGCCCTTCCAAAGT 76070 ||||| |||| || |||||||| || |||| Sbjct 8300 GTGCAACCTGGCCTCGATCGCCCTGCCCAAGT 8331 >seq18213 Length=2148 Score = 156 bits (172), Expect = 5e-33 Identities = 410/614 (67%), Gaps = 20/614 (3%) Strand=Plus/Minus Query 75211 CCCACAGTACATGTTCATGCGGGTCGCAATCGGCATCCACGGGGAAGACATTGATTCTGT 75270 ||| ||| ||||| ||||||| || || |||| | ||| ||| |||| | || Sbjct 668 CCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGT 609 Query 75271 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 75330 | | ||||| |||||| | | || ||| | |||| ||||| || || |||||||| Sbjct 608 CATCGAGACCTACGACTTGCTCTCGCAACAGCTCTTCACCCACGCCACGCCCACCCTCTT 549 Query 75331 CAATGCTGGTACACCAAGACCGCAGATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 75390 ||| || || || || | || ||| | || |||||||| || ||| |||||||| Sbjct 548 CAACGCCGGCACCCCCCGCCCACAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGA 489 Query 75391 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 75450 ||| ||| | |||||||| | || || | | |||| || | ||||| |||| ||||| Sbjct 488 CTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGG 429 Query 75451 GGGTATTGG----GATGCACATC-CATGATGTGAGAGCCAATAAATCTCGT--ATTCGGG 75503 ||||| || | ||| || | || | | ||| | | ||||| ||||| | Sbjct 428 CGGTATCGGCGTCGCTGCCCACCGCA-----TCCGCGCC--TCCAACTCGTACATTCGCG 376 Query 75504 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 75563 | || || || || || || | | || ||||| ||||| | |||| ||| || | Sbjct 375 GCACCAACGG-CACCTCGAACGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCC 317 Query 75564 GCTATGTAAATCA-AGCGG-GGC-GTCGCAAGGGGTCCATCGCGGTCTACTTGGAACCAT 75620 |||| || | || |||| ||| |||||||| || | || ||||| | || || | Sbjct 316 GCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTACCTCGAGCCGT 257 Query 75621 GGCATGCCGATATCATGGAGTTCCTTGAG-TTACGACTCAACCAAGGTGACGAAGAGGCT 75679 |||| ||||| ||| | || || | ||| | | || ||||| || | || ||| Sbjct 256 GGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGA-AGAACCACGGCAAGGAGGAGAAC 198 Query 75680 CGGTGTAGAGATCTCTTTTCATCCCTGTGGATTCCAGACCTTTTCATGAAGCGGGTTGAG 75739 || | | || ||||| | ||||||||| || ||||| ||||||||||| || ||| Sbjct 197 CGCGCTCGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAG 138 Query 75740 GAGGGTGGTCAATGGTCTCTTTTCTGTCCAGACAAGGCACCAGGTCTCTCCGACGCGGTG 75799 || || | ||||| || ||||| || || |||| || || || | ||| || | Sbjct 137 TCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTGG 78 Query 75800 GGTGAGGAGTTTGA 75813 || |||||||||| Sbjct 77 GGCAAGGAGTTTGA 64 >seq2671 Length=7052 Score = 111 bits (122), Expect = 2e-19 Identities = 168/237 (71%), Gaps = 3/237 (1%) Strand=Plus/Minus Query 64996 GCCATCCAAACTGTACCATGTATTGAGAAGAAGGCGAAATGGGCAATGAAATGGTTTGAC 65055 |||||| |||| || || | | |||||||||| | ||||| ||| |||| | || Sbjct 3231 GCCATCGAAACGGTGCCCTCGGTGAAGAAGAAGGCCGAGTGGGCGATGCGATGGATCAAC 3172 Query 65056 ACAAAGTC--TCG-CTCCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATC 65112 | || ||| | |||| ||||||||||| ||| ||| || || ||||| ||| Sbjct 3171 AAGGAGGGCGTCGACACCTTTGCCGAGCGCCTCGTTGGGTTCGCCGCAGTCGAGGGCATC 3112 Query 65113 TTCTTCTCCGGGTCATTCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGC 65172 |||||||| || || ||||| | || | ||| | ||||| || ||||||||||| ||| Sbjct 3111 TTCTTCTCGGGCTCCTTCTGTTCCATCTTCTGGCTCAAGAAACGCGGTCTCATGCCCGGC 3052 Query 65173 CTATGCTTCTCAAATGAACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGCC 65229 || |||||| || || || || ||| || ||||| || ||| ||||||||| Sbjct 3051 CTCGCCTTCTCCAACGAGCTCATCAGCCGCGACGAGGGCCTGCACGCCGAGTTTGCC 2995 >seq283 Length=14928 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 65071 TTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCATTC 65130 ||| |||| ||||| | |||||||| || ||||| ||||||||||| || || ||| Sbjct 2852 TTCCCCGAACGCCTCGTGGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCTGGCTCCTTC 2911 Query 65131 TGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATGAA 65190 ||| | || | |||| | |||||||| || |||||||| ||||| ||| || || || Sbjct 2912 TGCTCCATCT-TTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCGCCTTTTCCAACGAG 2970 Query 65191 CTTATTTCCCGAGATGAGGG 65210 || ||| |||||||| || Sbjct 2971 CTCATTAGTCGAGATGAAGG 2990 >seq8173 Length=3122 Score = 82.4 bits (90), Expect = 9e-11 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 65069 CCTTCGCCGAGCGCCTTTTTGCGTTTGCGTGTGTGGAGGGTATCTTCTTCTCCGGGTCAT 65128 ||||| ||||||| || | | || || || ||||| |||||||||||||| || | Sbjct 1686 CCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTT 1627 Query 65129 TCTGCGCTATTTATTGGTTGAAGAAGCGGGGTCTCATGCCAGGCCTATGCTTCTCAAATG 65188 ||||| | || | ||| | |||||||| || || ||||| || || |||| || | Sbjct 1626 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 1567 Query 65189 AACTTATTTCCCGAGATGAGGGTCTCCACCAGGAGTTTGC 65228 | ||||| ||| || |||||||| ||| || ||||| Sbjct 1566 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 1527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596220614241120