Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq36027 118 3e-21 seq480 118 3e-21 seq46277 107 6e-18 seq16840 107 6e-18 >seq36027 Length=1017 Score = 118 bits (130), Expect = 3e-21 Identities = 185/260 (71%), Gaps = 6/260 (2%) Strand=Plus/Minus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || ||||| || || || ||||| ||||||||||||| || |||||||| | ||| Sbjct 676 GTCTTCACAGCCGTGTCGATAAGACCTTCACGACCACCCATGGCGTGGAAGAAGAACTCC 617 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTC-GGGCGAATC 302738 | |||| || || | | | ||| |||| ||||| || || | ||| |||| || Sbjct 616 TGCGGTGTCAGACCGCGCAGGTACGAGTTCTCGACGAAGCCTCGTGACTCCGGGCCAAA- 558 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| |||| |||||| ||||| || | || | ||| | | || || ||||| || Sbjct 557 GTCGTCCTTGACAAAGTGCGGCAGCGTGCGGTCCCGGAAGCAGAAGGGAATGCGCTTGCC 498 Query 302799 ATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG--CCC 302856 || ||||||||||| |||| ||| | | || |||||| || || | || | | ||| Sbjct 497 CTCGACGTTCTGCTGGCCCACGCAGGCGAGCACCTGCGAGATGTTGA--TCGCCGAACCC 440 Query 302857 TTGGAGCCAGCATTTACCAT 302876 |||||||| ||| | ||||| Sbjct 439 TTGGAGCCGGCAATCACCAT 420 >seq480 Length=17280 Score = 118 bits (130), Expect = 3e-21 Identities = 185/260 (71%), Gaps = 6/260 (2%) Strand=Plus/Plus Query 302620 GTTTTTACAGCTGTATCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCT 302679 || || ||||| || || || ||||| ||||||||||||| || |||||||| | ||| Sbjct 2467 GTCTTCACAGCCGTGTCGATAAGACCTTCACGACCACCCATGGCGTGGAAGAAGAACTCC 2526 Query 302680 TCCGGTCGTAGCCCCCCAATAAAGGAGCTCTCAACGAAACCACGCGCCT-CGGGCGAATC 302738 | |||| || || | | | ||| |||| ||||| || || | || ||||| || Sbjct 2527 TGCGGTGTCAGACCGCGCAGGTACGAGTTCTCGACGAAGCCTCGTGACTCCGGGCCAA-A 2585 Query 302739 GTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCC 302798 |||| |||| |||||| ||||| || | || | ||| | | || || ||||| || Sbjct 2586 GTCGTCCTTGACAAAGTGCGGCAGCGTGCGGTCCCGGAAGCAGAAGGGAATGCGCTTGCC 2645 Query 302799 ATCAACGTTCTGCTGTCCCAGGCACGAAATCATCTGCGAAATATTTAAATCACTG--CCC 302856 || ||||||||||| |||| ||| | | || |||||| || || ||| | | ||| Sbjct 2646 CTCGACGTTCTGCTGGCCCACGCAGGCGAGCACCTGCGAGATGTT--GATCGCCGAACCC 2703 Query 302857 TTGGAGCCAGCATTTACCAT 302876 |||||||| ||| | ||||| Sbjct 2704 TTGGAGCCGGCAATCACCAT 2723 >seq46277 Length=1086 Score = 107 bits (118), Expect = 6e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Minus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| | || ||| || || ||||| || | ||| || || ||| || | || Sbjct 379 GGCGATCATGCCGCACAGATCGCATACATGCACTCGGTAGGCGTCCGATTGATCGAAGAG 320 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 ||| ||||| ||| | | || ||||| || ||||| || || |||||||| || || Sbjct 319 CCGCTCCTTGAGGAACTGGGCAGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCC 260 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 ||| |||||||||||||| || | | |||||| | ||||| || ||||| | || Sbjct 259 GAATCGAAGACCACCATCACGCGAACGACCCTCTACGGGCTGCCGGGTGAGGATCTGCAC 200 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 || ||| | || || |||||||| ||||| ||||| || ||||||||| | Sbjct 199 GGGGCCGCGCGCACGCGAGTGGATCTTATCATCCACCATGTGCTTCAGTCGCTGGTAGTA 140 Query 251643 TGCGGGACCGATGAAGA 251659 | || |||||||||| Sbjct 139 GGTCGGTCCGATGAAGA 123 >seq16840 Length=1257 Score = 107 bits (118), Expect = 6e-18 Identities = 178/257 (69%), Gaps = 0/257 (0%) Strand=Plus/Plus Query 251403 GGCGATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAG 251462 |||||| | || ||| || || ||||| || | ||| || || ||| || | || Sbjct 882 GGCGATCATGCCGCACAGATCGCATACATGCACTCGGTAGGCGTCCGATTGATCGAAGAG 941 Query 251463 CCGACCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACC 251522 ||| ||||| ||| | | || ||||| || ||||| || || |||||||| || || Sbjct 942 CCGCTCCTTGAGGAACTGGGCAGCGCCGTGGGAGATCATGCAGTCGCGCTCCATCTCTCC 1001 Query 251523 GAAACGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCAT 251582 ||| |||||||||||||| || | | |||||| | ||||| || ||||| | || Sbjct 1002 GAATCGAAGACCACCATCACGCGAACGACCCTCTACGGGCTGCCGGGTGAGGATCTGCAC 1061 Query 251583 AGGACCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 || ||| | || || |||||||| ||||| ||||| || ||||||||| | Sbjct 1062 GGGGCCGCGCGCACGCGAGTGGATCTTATCATCCACCATGTGCTTCAGTCGCTGGTAGTA 1121 Query 251643 TGCGGGACCGATGAAGA 251659 | || |||||||||| Sbjct 1122 GGTCGGTCCGATGAAGA 1138 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1470935080229263