Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_021924.1 Length=129052 Score E Sequences producing significant alignments: (Bits) Value seq5471 86.0 5e-12 seq1764 86.0 5e-12 >seq5471 Length=1927 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Plus Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230 |||| ||||| |||||||||||||| ||||| |||| || ||||||||| | ||| Sbjct 279 GGACCTCACGGTTTCCACGTGCACGAGTTTGGTGACAACACCAACGGCTGCGTGAGCGCG 338 Query 107231 GGTGAACACTTCAATCCCACATACCAA-AATCACGGTGCGCCCGACGCCGTAGAAAGGCA 107289 || | |||||||| ||| | |||| || ||||||| || || | | ||| | || Sbjct 339 GGAGGTCACTTCAA-CCCCTTTGCCAAGAAGCACGGTGGCCCTGAAGATGAAGAGCGCCA 397 Query 107290 CGTCGGCGATCTGGGCAACGT 107310 ||| |||||||| ||||| || Sbjct 398 CGTGGGCGATCTTGGCAATGT 418 >seq1764 Length=9704 Score = 86.0 bits (94), Expect = 5e-12 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 107171 GGACTGCACGGCTTCCACGTGCACGAATTTGGCGACACCAGCAACGGCTGTACGTCCGCC 107230 |||| ||||| |||||||||||||| ||||| |||| || ||||||||| | ||| Sbjct 3313 GGACCTCACGGTTTCCACGTGCACGAGTTTGGTGACAACACCAACGGCTGCGTGAGCGCG 3254 Query 107231 GGTGAACACTTCAATCCCACATACCAA-AATCACGGTGCGCCCGACGCCGTAGAAAGGCA 107289 || | |||||||| ||| | |||| || ||||||| || || | | ||| | || Sbjct 3253 GGAGGTCACTTCAA-CCCCTTTGCCAAGAAGCACGGTGGCCCTGAAGATGAAGAGCGCCA 3195 Query 107290 CGTCGGCGATCTGGGCAACGT 107310 ||| |||||||| ||||| || Sbjct 3194 CGTGGGCGATCTTGGCAATGT 3174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 412606130503907