Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_023442.1 Length=120420 Score E Sequences producing significant alignments: (Bits) Value seq20914 93.3 3e-14 seq1090 87.8 1e-12 seq35388 82.4 6e-11 >seq20914 Length=1556 Score = 93.3 bits (102), Expect = 3e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 29571 ACGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGA 29630 ||| || || | ||||| || || || || || ||||| || || || | |||||| Sbjct 261 ACGAAGGACGAGGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTGCGGCC 202 Query 29631 ATCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTT 29690 || ||||| || |||||||| | || | | ||||| ||||| ||||||||||| || Sbjct 201 GTCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGAGGAATACCCTCCTT 142 Query 29691 GTCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTAT 29750 ||| || | || || || || | || | ||||| || || || || || || || Sbjct 141 GTCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCGGACGACTCGACCTCGAGCGTAAT 82 Query 29751 AGTTTTGCCAGTTAAGGTTTTAACAAATATCTGCAT 29786 || || || || | |||||| || || |||||||| Sbjct 81 CGTCTTACCCGTAAGGGTTTTGACGAAGATCTGCAT 46 >seq1090 Length=10094 Score = 87.8 bits (96), Expect = 1e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 29572 CGCAGCACCAAATGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAA 29631 || |||||||| || || ||||| || || || ||||| || || || | ||||| Sbjct 7788 CGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGCGTGCGGCCG 7847 Query 29632 TCATCGAGTTGTTTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTG 29691 || || || || ||||| || | || | | ||||| || ||||| || ||||||||| Sbjct 7848 TCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCTTTG 7907 Query 29692 TCTTGTAATTTTTGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATA 29751 || || | || || || || | || | ||||| || || || || || || || Sbjct 7908 TCCTGGATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGGACTCGACCTCGAGCGTAATG 7967 Query 29752 GTTTTGCCAGTTAAGGTTTTAACAAATATCTGCATT 29787 || ||||| || | ||| || || || ||||||||| Sbjct 7968 GTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATT 8003 >seq35388 Length=1012 Score = 82.4 bits (90), Expect = 6e-11 Identities = 140/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 29584 TGAAGCGTGGATTCTTTTTGAATGTTATAATCCGCAATGGTGCGAGAATCATCGAGTTGT 29643 || || || ||||| || || ||||| || || || | ||| || || || || || Sbjct 229 TGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGGCCGTCCTCAAGCTGC 170 Query 29644 TTGCCAGCATATATCAATCTTTGCTGATCCGGCGGAATACCCTCTTTGTCTTGTAATTTT 29703 ||||| || | || | | ||||| ||||| ||||||||||| || || || | || Sbjct 169 TTGCCGGCGAAAATGAGGCGCTGCTGGTCCGGGGGAATACCCTCCTTATCCTGAATCTTC 110 Query 29704 TGTTTGACAGTTTCTACAGTGTCAGAAAGTTCTACTTCAAGAGTTATAGTTTTGCCAGTT 29763 || || || | || | ||||| || || || || ||||| ||||| || || || Sbjct 109 TGCTTCACGTTCTCGATGGTGTCCGACGACTCGACCTCGAGAGTAATAGTCTTACCCGTC 50 Query 29764 AAGGTTTTAACAAATATCTGCAT 29786 ||||| || || || |||||||| Sbjct 49 AAGGTCTTGACGAAGATCTGCAT 27 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384999485293659