Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_023848.1 Length=163023 Score E Sequences producing significant alignments: (Bits) Value seq26212 93.3 4e-14 seq2171 93.3 4e-14 >seq26212 Length=1016 Score = 93.3 bits (102), Expect = 4e-14 Identities = 115/152 (76%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 21749 CCCGAAATAGGCGACAAGTTCTGTTC-CGGCATGGCCCAGAAAGGCACCTGCGGGATGAT 21807 ||| |||| |||||||||||| |||| || || || | |||| ||||| || || || Sbjct 753 CCCCAAATCGGCGACAAGTTCAGTTCGCGCCACGGAC-AGAAGGGCACGGTGGGCATCAT 811 Query 21808 CTATTCGCAAGAAAACATGCCATTCA-CATCTTCCGGCATGACCCCCGACATCATCATCA 21866 || ||||| ||||||| |||| |||| ||||| ||||||||||||||| ||| Sbjct 812 GTACCGCCAAGAGGACATGCCCTTCAACATCGAG-GGCATCACCCCCGACATCATCGTCA 870 Query 21867 ACCCCAACTGCATTCCCTCCAGAATGACCATT 21898 |||| || ||| |||||| | ||||||||| Sbjct 871 ACCCGCACGCCATCCCCTCCCGTATGACCATT 902 >seq2171 Length=1648 Score = 93.3 bits (102), Expect = 4e-14 Identities = 115/152 (76%), Gaps = 4/152 (3%) Strand=Plus/Plus Query 21749 CCCGAAATAGGCGACAAGTTCTGTTC-CGGCATGGCCCAGAAAGGCACCTGCGGGATGAT 21807 ||| |||| |||||||||||| |||| || || || | |||| ||||| || || || Sbjct 1015 CCCCAAATCGGCGACAAGTTCAGTTCGCGCCACGGAC-AGAAGGGCACGGTGGGCATCAT 1073 Query 21808 CTATTCGCAAGAAAACATGCCATTCA-CATCTTCCGGCATGACCCCCGACATCATCATCA 21866 || ||||| ||||||| |||| |||| ||||| ||||||||||||||| ||| Sbjct 1074 GTACCGCCAAGAGGACATGCCCTTCAACATCGAG-GGCATCACCCCCGACATCATCGTCA 1132 Query 21867 ACCCCAACTGCATTCCCTCCAGAATGACCATT 21898 |||| || ||| |||||| | ||||||||| Sbjct 1133 ACCCGCACGCCATCCCCTCCCGTATGACCATT 1164 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 521240502343320