Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq2671 145 1e-29 seq283 104 3e-17 >seq2671 Length=7052 Score = 145 bits (160), Expect = 1e-29 Identities = 368/559 (66%), Gaps = 8/559 (1%) Strand=Plus/Plus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| || || || |||||||| || | || || | ||||| || || | ||| Sbjct 2992 GCAGGCAAACTCGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAG 3051 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAA 39735 || ||||| ||||| || || |||||||| || |||| | || || || || ||||| Sbjct 3052 GCCGGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAA 3111 Query 39736 GATGCCTTCTACTGCTGCAAATGCAACAAGTCTCTCTCCGTAACTTGT-------ATCAT 39788 |||||| || ||||| || || |||| || | ||| | || ||| || | Sbjct 3112 GATGCCCTCGACTGCGGCGAACCCAACGAGGCGCTCGGC-AAAGGTGTCGACGCCCTCCT 3170 Query 39789 TATGTATCCACTTCTGTGCCCAATCAGCTTTCTTCTTTACACAAGGCATTGTTTCTATAG 39848 | | ||||| | ||||| || || |||||||| || | |||| ||||| || | Sbjct 3171 TGTTGATCCATCGCATCGCCCACTCGGCCTTCTTCTTCACCGAGGGCACCGTTTCGATGG 3230 Query 39849 CATTAAAGAGATAATGTTTTTCATCACTATCTTTAACATATGTATCTATTAACAGACTAT 39908 |||| ||||||| || || | || || || || ||||| | | || | Sbjct 3231 CATTGAAGAGATGGGCCTTCTCGACGGGGTCCTTGACGTAGGTATCCAGGAGGAGCGAGT 3290 Query 39909 ACATTTCTGAATGGATGTTTTCAATCGCCATCTGAAATCCGTAAAAACATCTTGCTTCAG 39968 | | ||||| |||||||| || || || || || || || || || |||| ||| || | Sbjct 3291 AGGTCTCTGAGTGGATGTTCTCGATGGCTATTTGGAAGCCATAGAAGCATCGTGCCTCGG 3350 Query 39969 TAATTTGTACCTCTGAACAAAATCTTTCCGCCAAATTTTCATTCACTATTCCATCACTAG 40028 | ||| |||||| || | | ||||| || || ||| || || || |||| Sbjct 3351 GCACTTGCACCTCTTTCATGAAGCGACCGGCCAAGTTCTCCGCCACAATGCCGTCGCTAG 3410 Query 40029 CGGCAAAAAATGCCAATACATGTTTAATAAAATATTTTTCATCGGGTGTCAATTTATTCC 40088 ||||||| ||||||| || || || || || | | ||| || | || | | || Sbjct 3411 CGGCAAAGAATGCCAGAACGTGCTTGATGAAGTGCTGTTCGTCAGCTGAGAGAGATTGCC 3470 Query 40089 AGTCATTGATATCTTTTGATATATCTACTTCTTCAGCTGTCCAAAACGACGCCTCTGCCT 40148 ||| || || || | | ||| || || || |||||||| || || ||||| |||| Sbjct 3471 AGTGCTTCATGTCGTCGCCGAGATCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCGGCCT 3530 Query 40149 TTTTGTACATGTTCCATAT 40167 | |||||||| | ||| || Sbjct 3531 TCTTGTACATCTCCCAGAT 3549 >seq283 Length=14928 Score = 104 bits (114), Expect = 3e-17 Identities = 116/151 (77%), Gaps = 3/151 (2%) Strand=Plus/Minus Query 39616 GCAGGCGAAGTCACAATGTAGGCCCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAG 39675 |||||| ||||| ||| | || ||||||| |||||| | ||||| ||||| | ||| Sbjct 3012 GCAGGCAAAGTCGGCATGCATCCCTTCATCTCGACTAATGAGCTCGTTGGAAAAGGCGAG 2953 Query 39676 TCCAGGCATTAGACCACGCTTTTTGAGCCAAAATATGGCAGCAAAAG-ATCCAGAAAAGA 39734 || ||||| || || ||||| |||||||||| |||| |||| ||| | ||||| |||| Sbjct 2952 GCCGGGCATGAGTCCGCGCTTCTTGAGCCAAAG-ATGG-AGCAGAAGGAGCCAGAGAAGA 2895 Query 39735 AGATGCCTTCTACTGCTGCAAATGCAACAAG 39765 ||||||| || || || ||||| || || || Sbjct 2894 AGATGCCCTCGACGGCGGCAAACGCCACGAG 2864 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686506966938360