Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2664 102 7e-17 seq1090 100 2e-16 seq19930 98.7 8e-16 seq2350 93.3 4e-14 >seq2664 Length=7344 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27020 GCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCT 27079 ||| ||||||| || | || | || | || || || || || || ||||||||| Sbjct 1169 GCCGCCGCGCAGGCGAAGGACGAGGTGGAGAGTCGATTCCTTCTGGATGTTGTAGTCGGC 1228 Query 27080 CATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGG 27139 || | | || |||| || ||||| || |||||| | ||||| ||||| || ||||| || Sbjct 1229 CAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGG 1288 Query 27140 CACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAAC 27199 | ||||| || || |||||| | |||| | | || | ||||| | | || || Sbjct 1289 GATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCGATGGTGTCCGACGACTCGAC 1348 Query 27200 TTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || ||||| |||| || ||||||| || || || |||||||||||| Sbjct 1349 CTCGAGAGTAATAGTCTTACCCGTCAAGGTCTTGACGAAGATTTGCATA 1397 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || |||||||| | | | || | || |||||||| || ||| Sbjct 1428 GTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCGAGCTGCTTGCCG 1487 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| | || Sbjct 1488 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTCTGCTTG 1547 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | |||||| | | || || || || || || | ||||| || || || Sbjct 1548 ACGTTCTCAATAGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGTAAGGGTC 1607 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||||||||| Sbjct 1608 TTGACGAAGATTTGCAT 1624 >seq1090 Length=10094 Score = 100 bits (110), Expect = 2e-16 Identities = 141/198 (71%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 ||||| || || || || |||||||| | | | || | || |||||||| || ||| Sbjct 7350 GTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCGAGCTGCTTGCCG 7409 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| | ||| Sbjct 7410 GCGAAGATGAGACGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGGATCTTCTGCTTC 7469 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || || || || || || || | ||||| |||||||| Sbjct 7470 ACGTTCTCGATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTC 7529 Query 27231 TTCACAAAGATTTGCATA 27248 || || ||||| |||||| Sbjct 7530 TTGACGAAGATCTGCATA 7547 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 27039 ACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCG 27098 ||||| || | || || || || || || ||||||||| || | | || | || ||| Sbjct 7566 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCATCCTCG 7625 Query 27099 AGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCG 27158 ||||| || |||||| | ||||||||||| || ||||| || | ||||| || || | Sbjct 7626 AGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGG 7685 Query 27159 ATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTG 27218 ||||| | |||| | | || | ||||| | | || || || || || || | || Sbjct 7686 ATCTTCTGCTTCACGTTCTCGATGGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTA 7745 Query 27219 CCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 ||||| || || || || ||||| ||||| Sbjct 7746 CCCGTAAGGGTCTTGACGAAGATCTGCAT 7774 >seq19930 Length=1350 Score = 98.7 bits (108), Expect = 8e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || || || || |||||||| | | | || |||| |||||||| || ||| Sbjct 346 GTCGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCGAGCTGCTTGCCG 287 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | ||||||||||| || ||||| || | ||||| || || |||||| | ||| Sbjct 286 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTCTGCTTC 227 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | | | || | ||||| | || ||||| || || || |||| || ||||| || || Sbjct 226 ACGTTCTCGATGGTGTCCGAGGACTCAACCTCGAGCGTAATAGTCTTTCCCGTAAGGGTC 167 Query 27231 TTCACAAAGATTTGCAT 27247 || || ||||| ||||| Sbjct 166 TTGACGAAGATCTGCAT 150 >seq2350 Length=2056 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27019 TGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGC 27078 |||| || |||| || | ||||| || | || || || || || || |||||||| Sbjct 64 TGCCGCCACGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAG 123 Query 27079 TCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCG 27138 | | | || | || |||||||| || || ||| | ||||||||||| || || |||| Sbjct 124 CGAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCG 183 Query 27139 GCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAA 27198 | | ||||| || || |||||| | |||| | | || | ||||| | || || | Sbjct 184 GGATGCCCTCCTTGTCCTGGATCTTCTGCTTCACGTTCTCAATGGTGTCCGAGGACTCGA 243 Query 27199 CTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 | || || || || | ||||| || || || ||||| ||||| ||||| Sbjct 244 CCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 292 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424692033220488