Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq8173 111 5e-19 seq21360 96.9 1e-14 seq18213 84.2 7e-11 >seq8173 Length=3122 Score = 111 bits (122), Expect = 5e-19 Identities = 129/173 (75%), Gaps = 1/173 (1%) Strand=Plus/Minus Query 443699 CTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAGCTT 443758 |||| |||||| || ||| || || | |||||| || | || || |||| ||| Sbjct 1685 CTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCT-CTT 1627 Query 443759 TAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTAACG 443818 | ||||||||||||| | || ||||| || || |||| |||||| |||| || |||| Sbjct 1626 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 1567 Query 443819 AACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCTTCTCTAC 443871 | || ||||| || ||||||||| |||| |||||||| || || || |||||| Sbjct 1566 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGCTTGCCTCCTCTAC 1514 >seq21360 Length=1073 Score = 96.9 bits (106), Expect = 1e-14 Identities = 86/105 (82%), Gaps = 2/105 (2%) Strand=Plus/Plus Query 256535 CACTTTTACGGGTGGCGAAACGGCCTGAAGACGGGCATGTACTACCTGCGCACCCGACCA 256594 ||||| |||| ||||| || ||||| ||||||||||||||||||||||||||||| || Sbjct 930 CACTTCTACGCCTGGCGCAAGGGCCTCAAGACGGGCATGTACTACCTGCGCACCCGGCC- 988 Query 256595 GCGGCCGACCCGATCCAATTCACCGTAGCGCCAGA-GTGCTCGTC 256638 || ||| || ||||||| ||||| || | || || |||| |||| Sbjct 989 GCCGCCAACGCGATCCAGTTCACGGTCGAGCAGGAGGTGCCCGTC 1033 >seq18213 Length=2148 Score = 84.2 bits (92), Expect = 7e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | || || | |||| || || ||||||||||| || || |||||||| ||| Sbjct 347 CCGATGCTGCGCGTCTACAACGACACTGCCCGCTACGTCGACCAGGGCGGCGGCAAGCGC 288 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACAT 255084 || || || |||||||||| |||||||||||||||||||| Sbjct 287 AAGGGCGCCTTTGCCATCTACCTCGAGCCGTGGCACGCCGACAT 244 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1587383614376555