Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq960 206 3e-48 seq18213 147 3e-30 seq2671 96.9 4e-15 seq283 91.5 2e-13 seq8173 86.0 8e-12 >seq960 Length=8959 Score = 206 bits (228), Expect = 3e-48 Identities = 576/873 (66%), Gaps = 23/873 (3%) Strand=Plus/Minus Query 111225 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 111284 |||| || |||||||| || |||| ||||| || ||| || || ||||||| Sbjct 8331 ACTTGGGCAGGGCGATCGAGGCCAGGTTGCACACGGCCACTTCGTCGGGCGAGGTGTACT 8272 Query 111285 CTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 111344 | | || || || | ||| || || ||||| |||| | || ||||| || Sbjct 8271 GGATGACCTCCGTGCACAGGTTCGACGACTGGATCGTGCCCAGGTGCTGCTGGTTCGACT 8212 Query 111345 TCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGA 111404 | ||||||| || ||||||||||||||||||||||| || ||||| |||| || | || Sbjct 8211 TGCTGTTGCAGGCGTCCTTGTAGAGCATGTAGGGCGTGCCAGTCTCGATCTGCGACTCGA 8152 Query 111405 GAATAGCCTTCCAAACATCGGCGGCTGGTACAAT--GGCGTTGGCCCGTCCCTCCGCCTC 111462 | || || ||| | || ||| || | |||| ||| || |||||| ||| Sbjct 8151 GGATCGCAAACCAGAGCTCCTGGGCCTTGACCACCCGGCG--GGCGCGGCCCTCCAGCTC 8094 Query 111463 GTACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTT 111522 ||| || | |||||||||| ||| || ||| | || || || |||| Sbjct 8093 GTAGCGCTCATACTTCTCCTCAAACTCCTTGCCCCACGAGTCAAACAGGCCGGGCGCCTC 8034 Query 111523 GTCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGG 111582 || || ||||| || ||||| | || || ||| || ||||||||||| ||||| || Sbjct 8033 GTTGGGGCAGAAGAGCGACCAGTCGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGG 7974 Query 111583 AATCCACAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 111642 ||||||||| | ||||| || | | || ||| || | || ||||| || Sbjct 7973 GATCCACAGGCCGTAGAAGAGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCT-TCT 7915 Query 111643 TAA-CTCAAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATC 111701 | | ||| | || || | ||| || |||||||| ||||| ||||||| || | | | Sbjct 7914 TGAGCTCCAAAAAGTCAAAGATGTCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGC 7855 Query 111702 CCTTTCGAC-GCC--CAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCA 111758 |||| || ||| | | || | || ||||| || ||| |||| | ||||| |||| Sbjct 7854 CCTTGCGCTTGCCGCCGCCCTGGTCGACGTAGCGGGCAGTGTCGTTGTAGACGCGCAGCA 7795 Query 111759 TTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCT 111816 | || | | ||| | || || || || || ||||| ||||| | | ||| | Sbjct 7794 TCGGGACGAGACCGTTCGAGGTGCCGTTGGTGCCGCGAATGTACGAGTTGGA--GGCGCG 7737 Query 111817 CACATCATG-GATGTGCATC----CCAATACCCCCAGCCCACTTTGAGATTTGCGCACAC 111871 | || | || ||| | || ||||| ||||| |||| ||||| | || ||| Sbjct 7736 GA-----TGCGGTGGGCAGCGACGCCGATACCGCCAGCTGACTTGGAGATGAGGGCGCAC 7682 Query 111872 TCCGTAAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAA 111931 | | | || || | |||||||| | ||| ||||||||||| ||| || |||||||| Sbjct 7681 TGCTTGAGCGTGTCGTAGATACCCTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCAC 7622 Query 111932 CTGGACATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAAC 111991 || | |||||| | || || || || ||||||||||| ||||| ||||| |||| Sbjct 7621 GACGAAAGCTGCGGGCGGGGGGTGCCGGCGTTGAAGAGGGTCGGTGTGGCGTGGGTGAAG 7562 Query 111992 ATACCTTGGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATG 112051 | ||| || | | |||||| ||||| | ||| | |||| ||| ||| | Sbjct 7561 AGCTGTTGCGAGAGCAAGTCGTAGGTCTCGATGACGGCGGGGATGTTGTCCATGTGAAGA 7502 Query 112052 CCGATTGCGACCCGCATGAACATGTACTGTGGG 112084 |||| || || ||||||| ||||| ||| ||| Sbjct 7501 CCGACGGCAACACGCATGAGCATGTGCTGGGGG 7469 >seq18213 Length=2148 Score = 147 bits (162), Expect = 3e-30 Identities = 407/614 (66%), Gaps = 20/614 (3%) Strand=Plus/Plus Query 111482 TCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAGAGAC 111541 |||||||||| ||| || ||| | || || || |||| || || ||||| || ||| Sbjct 64 TCAAACTCCTTGCCCCACGAGTCAAACAGGCCGGGCGCCTCGTTGGGGCAGAAGAGCGAC 123 Query 111542 CATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAGGGATGAAAAG 111601 || | || || ||| || ||||||||||| ||||| || ||||||||| | ||| Sbjct 124 CAGTCGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGGGATCCACAGGCCGTAGAAG 183 Query 111602 AGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAA-CTCAAGGAACTCCAT 111660 || || | | || ||| || | || ||||| || | | ||| | || || | Sbjct 184 AGGTCGCGAGCGCGGTTCTCCTCCTTGCCGTGGTTCT-TCTTGAGCTCCAAAAAGTCAAA 242 Query 111661 GATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCCCTTTCGAC-GCC--CAGC 111717 ||| || |||||||| ||||| || |||| || | | ||||| || ||| | | Sbjct 243 GATGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 302 Query 111718 TTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCATCTGA 111777 || | || ||||| || ||| |||| | ||||| ||||| || | | || || Sbjct 303 CTGGTCGACGTAGCGGGCAGTGTCGTTGTAGACGCGCAGCATCGGGACGAGACGTTCGAG 362 Query 111778 TTGACCATTTGTCCCCCGAAT--ACGAGATTTATTGGCTCTCACATCATG-GATGTGCAT 111834 || || || || || ||||| ||||| | | ||| | | || | || ||| Sbjct 363 GTG-CCGTTGGTGCCGCGAATGTACGAGTTGGA--GGCGCGGA-----TGCGGTGGGCAG 414 Query 111835 C----CCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGA 111890 | || ||||| ||||| |||| ||||| | || |||| | | || || | |||| Sbjct 415 CGACGCCGATACCGCCAGCTGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGA 474 Query 111891 TACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTG 111950 |||| | ||| ||||||||||| ||| || |||||||| || | ||| || | | Sbjct 475 TACCCTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCACGACGAAAGCTGTGGGCGGG 534 Query 111951 GTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGGGACATCTTGT 112010 | || || || ||||||||||| || || ||||| |||| | ||| || | | || Sbjct 535 GGGTGCCGGCGTTGAAGAGGGTGGGCGTGGCGTGGGTGAAGAGCTGTTGCGAGAGCAAGT 594 Query 112011 CGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGA 112070 |||| ||||| | ||| | |||| ||| ||| | |||| || || ||||||| Sbjct 595 CGTAGGTCTCGATGACGGCGGGGATGTTGTCCATGTGAAGACCGACGGCAACACGCATGA 654 Query 112071 ACATGTACTGTGGG 112084 ||||| ||| ||| Sbjct 655 GCATGTGCTGGGGG 668 >seq2671 Length=7052 Score = 96.9 bits (106), Expect = 4e-15 Identities = 165/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 122658 GGCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACC 122717 ||||||||| ||| || ||||| || ||| || || || || |||||| || || Sbjct 2995 GGCAAACTCGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCC 3054 Query 122718 TGGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGAT 122777 ||||||||||| || ||||| | ||| | || | ||||| || || ||||||||||| Sbjct 3055 GGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGAT 3114 Query 122778 ACCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGGAG-CGAGACTTTGC--ATC 122834 ||||| || || ||| ||| ||||| ||||| |||| | ||| | | | | Sbjct 3115 GCCCTCGACTGCGGCGAACCCAACGAGGCGCTCGGCAAAGGTGTCGACGCCCTCCTTGTT 3174 Query 122835 AAACCATTTCATTGCCCATTTCGCCTTCTTCTCAATACATGGTACAGTTTGGATGGC 122891 | |||| ||| ||||| | |||||||||| | | || || |||| |||||| Sbjct 3175 GATCCATCGCATCGCCCACTCGGCCTTCTTCTTCACCGAGGGCACCGTTTCGATGGC 3231 >seq283 Length=14928 Score = 91.5 bits (100), Expect = 2e-13 Identities = 105/140 (75%), Gaps = 1/140 (1%) Strand=Plus/Minus Query 122677 CCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCTGGCATGAGACCCCGCTTC 122736 || |||||||| ||| || || || || ||| || || |||||||| || |||||| Sbjct 2990 CCTTCATCTCGACTAATGAGCTCGTTGGAAAAGGCGAGGCCGGGCATGAGTCCGCGCTTC 2931 Query 122737 TTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATACCCTCCACACACGCAAAC 122796 || | |||| | || | |||||| || || ||||||||||| ||||| || |||||| Sbjct 2930 TTGAGCCAA-AGATGGAGCAGAAGGAGCCAGAGAAGAAGATGCCCTCGACGGCGGCAAAC 2872 Query 122797 GCAAAAAGGCGTTCGGCGAA 122816 || | |||||||||| ||| Sbjct 2871 GCCACGAGGCGTTCGGGGAA 2852 >seq8173 Length=3122 Score = 86.0 bits (94), Expect = 8e-12 Identities = 148/211 (70%), Gaps = 3/211 (1%) Strand=Plus/Plus Query 122659 GCAAACTCCTGGTGGAGACCCTCATCTCGGGAAATAAGTTCATTTGAGAAGCATAGACCT 122718 ||||| || ||| |||||||| || ||| ||||| || || |||| ||||| Sbjct 1527 GCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGACCG 1586 Query 122719 GGCATGAGACCCCGCTTCTTCAACCAATAAATAGCGCAGAATGACCCGGAGAAGAAGATA 122778 ||||| || || |||||||| | ||| | || | |||||| || |||||||||||||| Sbjct 1587 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATG 1646 Query 122779 CCCTCCACACACGCAAACGCAAAAAGGCGTTCGGCGAAGG-AGCGAGACTTTGCAT-CAA 122836 ||||| || || || | | || || |||| ||||| ||| || | | | ||| Sbjct 1647 CCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTTGCAA 1706 Query 122837 A-CCATTTCATTGCCCATTTCGCCTTCTTCT 122866 | ||| ||| ||||| | |||||||||| Sbjct 1707 ATCCAGCGCATGGCCCACTCGGCCTTCTTCT 1737 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627664609130400