Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq960 297 2e-75 seq18213 224 1e-53 seq2671 129 7e-25 seq8173 96.9 4e-15 seq283 96.9 4e-15 seq21360 89.7 6e-13 >seq960 Length=8959 Score = 297 bits (328), Expect = 2e-75 Identities = 948/1446 (66%), Gaps = 47/1446 (3%) Strand=Plus/Minus Query 118134 AGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTC 118193 || |||| ||||| || || || || || ||| |||| | | ||||| |||||| Sbjct 8890 AGGTGCTCGTTGACGACGGTGAAGTCGCCGGCAAGGATGCGGCGCGTGTAGATGTTGGTC 8831 Query 118194 GTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATG 118253 ||||| |||||||||||||| ||||| || | ||| || | || ||||| || |||||| Sbjct 8830 GTGTAGGGCTCAAAGCACTCGTTGTTGCCGAGGATCTGCGAGGTCGAGGCAGTCGGCATG 8771 Query 118254 GGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCC 118313 || || | ||| || ||| ||||| || | |||| | |||| | || Sbjct 8770 GGCGCGACGAGCAGCGAGTTGCGGAGGCCGTGGCGGGCAATGTTGGCGCGCAGAGTGGCC 8711 Query 118314 CAGTCGTA--GTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGG 118371 ||||| | | | | | | | || ||| | || || || | || | | Sbjct 8710 CAGTCCCAACGGTCCGACGGGACGACGCC--CCAGAGGTCGGGTTGCAGCTTGCCCTTCG 8653 Query 118372 ACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAATTCG---GAGC 118428 | || ||||| || | ||||| || | |||||| |||| |||| ||| ||| Sbjct 8652 AGGCCGGCGAGCCGGGGTAGGTCTCGTAGGTGCCCTCGACCTGGGCCAGCTCGTTCGAG- 8594 Query 118429 TCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCA-TTCATTGCCTTGGCC 118487 ||| || || || | || || || ||||| ||| | || || | | |||| Sbjct 8593 --GCCACGCAAGCGGCATAGTAGATGGTCTCAAAGATG-GCGCGGTTGAGCTCGCGGGCC 8537 Query 118488 TCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCG 118547 |||||| || ||| | | || | || || || || || || || || || || Sbjct 8536 TCGTCGCTCTCCCACGGGTGGCGCAGGATCATGAAGACGTCGGCCAGGCCCTGCACGCCA 8477 Query 118548 AGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAA 118604 | ||| || ||||| || | | || || | || || ||| ||| || || | Sbjct 8476 ATGCCGATGGGGCGGTGGCGCTGGTTCGAGGTGCGGGC---CTCGGGCACCGGGTAGTAG 8420 Query 118605 TTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTT 118664 || | ||||| ||| | || || || |||||||| ||||| | ||| ||||| Sbjct 8419 TTGATGTCGATCACCTTGTTGAGGTTCTTGGTGACGACCTTGACCACGTCAAACAGCTTC 8360 Query 118665 TCGTAATCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGA 118724 | || |||||| ||| ||| | ||| |||| || |||||||| || ||||| Sbjct 8359 TGGTGATCAAA-CTGGCCGTCGA--CGATGA---ACTTGGGCAGGGCGATCGAGGCCAGG 8306 Query 118725 TTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAA 118784 || ||||| | || || ||||||| || | |||||||||| ||| || Sbjct 8305 TTGCACACGGCCACTTCGTCGGGCGAGGTGTACTGGATGACCTCCGTGCACAGGTTCGAC 8246 Query 118785 CTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGC 118844 || || ||||||| || || || || ||||| |||| || || |||||||| ||| Sbjct 8245 GACTGGATCGTGCCCAGGTGCTGCTGGTTCGACTTGCTGTTGCAGGCGTCCTTGTAGAGC 8186 Query 118845 ATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACATC---GGCA 118901 ||||| ||||| || ||||| | || |||| ||| || || ||||| || ||| Sbjct 8185 ATGTAGGGCGTGCCAGTCTCGATCTGCGACTCGAGGATCGCAAACCAGAGCTCCTGGGC- 8127 Query 118902 GCTGGCACAGT-GGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAA 118960 || | || |||| ||| || ||||| |||||| || | ||||| Sbjct 8126 -CTTGACCACCCGGCG--GGCGCGGCCCTCCAGCTCGTAGCGCTCATACTTCTCCTCAAA 8070 Query 118961 CTC-TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGACCATT 119019 ||| || |||||| || | || || || |||| | ||||||||||| ||||| | Sbjct 8069 CTCCTTGCCCCACGAG-TCAAACAGGCCGGGCGCCTCGTTGGGGCAGAAGAGCGACCAGT 8011 Query 119020 GACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-AGAAGAGA 119078 || || ||| || ||||||||||||||||| |||||||| || |||| ||||||| Sbjct 8010 CGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGGGATCCACAG-GCCGTAGAAGAGG 7952 Query 119079 TCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTCCATGA 119136 || ||| ||| | |||| || | || || || | |||||||||||| | || Sbjct 7951 TCGCGA--GCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTGAGCTCCAAAAAGTCAAAGA 7894 Query 119137 TATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACCAGCCT 119193 | || ||||||||||| || || || | || | | ||||| || | || ||| Sbjct 7893 TGTCGGCGTGCCACGGCTCGAGATAGATGGCAAAGGCGCCCTTGCGCTTGCCGCCGCCCT 7834 Query 119194 GGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATCGGATT 119253 ||| || || | |||||| |||| | || || ||||| || | || ||| | || Sbjct 7833 GGTCGACGTAGCGGGCAGTGTCGTTGTAGACGCGCAGCATCGGGACGAGACCGTTCGAGG 7774 Query 119254 GGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGCATACC 119311 ||| || || || ||||| ||||| || ||| | || |||| | || Sbjct 7773 TGCCGTTGGTGCCGCGAATGTACGAG--TTGGAGGCGCGGATGCGGTGGGCAGCGACGCC 7716 Query 119312 AATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATCCCATC 119371 ||||| || || |||| ||||| | ||||||| | |||| || ||||||| || || Sbjct 7715 GATACCGCCAGCTGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGATACCCTC 7656 Query 119372 GATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGTGTACC 119431 ||||||||| |||| | | || ||||||||| ||| | || || | ||| || || Sbjct 7655 GATCGAGTCCTCCTTCATGGTGAGGAGGAAGCACGACGAAAGCTGCGGGCGGGGGGTGCC 7596 Query 119432 AGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCGTAGGT 119491 ||||||||||| || ||||| |||||| |||| | ||| || | | ||||||||| Sbjct 7595 GGCGTTGAAGAGGGTCGGTGTGGCGTGGGTGAAGAGCTGTTGCGAGAGCAAGTCGTAGGT 7536 Query 119492 CTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAACATGTA 119551 ||| | ||||||||| |||| ||| ||||| ||||| | || ||||| | ||||| Sbjct 7535 CTCGATGACGGCGGGGATGTTGTCCATGTGAAGACCGACGGCAACACGCATGAGCATGTG 7476 Query 119552 TTGGGG 119557 ||||| Sbjct 7475 CTGGGG 7470 >seq18213 Length=2148 Score = 224 bits (248), Expect = 1e-53 Identities = 423/611 (69%), Gaps = 16/611 (3%) Strand=Plus/Plus Query 118956 TCAAACTC-TTCACCCACGGCCTCTGAGAGCCCTGGTGCCTTATCTGGGCAGAAGAGAGA 119014 |||||||| || |||||| || | || || || |||| | ||||||||||| || Sbjct 64 TCAAACTCCTTGCCCCACGAG-TCAAACAGGCCGGGCGCCTCGTTGGGGCAGAAGAGCGA 122 Query 119015 CCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCGCCG-AGA 119073 ||| | || || ||| || ||||||||||||||||| |||||||| || |||| ||| Sbjct 123 CCAGTCGCCGCCAGACTCGACGCGCTTCATGAAGAGGTCGGGGATCCACAG-GCCGTAGA 181 Query 119074 AGAGATCCCGACAGCGAGCTTCT--TCATCCCCCTGATTGAGACGCAACTCCAAAAAGTC 119131 |||| || ||| ||| | |||| || | || || || | |||||||||||| Sbjct 182 AGAGGTCGCGA--GCGCGGTTCTCCTCCTTGCCGTGGTTCTTCTTGAGCTCCAAAAAGTC 239 Query 119132 CATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTGACCCCTTACGA---CGACC 119188 | ||| || ||||||||||| || ||||| | || | | ||||| || | || Sbjct 240 AAAGATGTCGGCGTGCCACGGCTCGAGGTAGATGGCAAAGGCGCCCTTGCGCTTGCCGCC 299 Query 119189 AGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAATGATACCATC 119248 |||||| || || | |||||| |||| | || || ||||| || | || || || Sbjct 300 GCCCTGGTCGACGTAGCGGGCAGTGTCGTTGTAGACGCGCAGCATCGGGACGAGACGTTC 359 Query 119249 GGATTGGCCATTTGTCCCCCGAAT--ACGAGACTTATTGGCTCTGACATCGTGGATGTGC 119306 | || || || || || ||||| ||||| || ||| | || |||| Sbjct 360 GAGGTG-CCGTTGGTGCCGCGAATGTACGAG--TTGGAGGCGCGGATGCGGTGGGCAGCG 416 Query 119307 ATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGCCGTAGATC 119366 | || ||||| || || |||| ||||| | ||||||| | |||| || ||||||| Sbjct 417 ACGCCGATACCGCCAGCTGACTTGGAGATGAGGGCGCACTGCTTGAGCGTGTCGTAGATA 476 Query 119367 CCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAGGCCTGGGT 119426 || ||||||||||| |||| | | || ||||||||| ||| | || || | ||| Sbjct 477 CCCTCGATCGAGTCCTCCTTCATGGTGAGGAGGAAGCACGACGAAAGCTGTGGGCGGGGG 536 Query 119427 GTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGATGAACATACCTTGGGACATCTTGTCG 119486 || || ||||||||||| || || || |||||| |||| | ||| || | | |||| Sbjct 537 GTGCCGGCGTTGAAGAGGGTGGGCGTGGCGTGGGTGAAGAGCTGTTGCGAGAGCAAGTCG 596 Query 119487 TAGGTCTCCAAGACGGCGGGAATGTCTTCCCCGTGAATACCGATCGAGACCCGCATAAAC 119546 |||||||| | ||||||||| |||| ||| ||||| ||||| | || ||||| | | Sbjct 597 TAGGTCTCGATGACGGCGGGGATGTTGTCCATGTGAAGACCGACGGCAACACGCATGAGC 656 Query 119547 ATGTATTGGGG 119557 |||| ||||| Sbjct 657 ATGTGCTGGGG 667 >seq2671 Length=7052 Score = 129 bits (142), Expect = 7e-25 Identities = 157/212 (74%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 130015 GGCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACC 130074 ||||||||| ||| || |||||||| ||| |||||| || || |||||| || || Sbjct 2995 GGCAAACTCGGCGTGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCC 3054 Query 130075 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGAT 130134 ||||||||||| || ||||| | |||||| || | ||| || ||||| ||||||||||| Sbjct 3055 GGGCATGAGACCGCGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGAT 3114 Query 130135 CCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAG-CG--GGACTTTGTATC 130191 ||||| || |||||| ||| ||| ||||| ||||||| | || | || | | Sbjct 3115 GCCCTCGACTGCGGCGAACCCAACGAGGCGCTCGGCAAAGGTGTCGACGCCCTCCTTGTT 3174 Query 130192 AAACCACTTCATCGCCCACTGCGCCTTTTTCT 130223 | ||| ||||||||||| ||||| |||| Sbjct 3175 GATCCATCGCATCGCCCACTCGGCCTTCTTCT 3206 >seq8173 Length=3122 Score = 96.9 bits (106), Expect = 4e-15 Identities = 198/288 (69%), Gaps = 5/288 (2%) Strand=Plus/Plus Query 130016 GCAAACTCCTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 130075 ||||| || ||| ||||||||||| ||| ||| || || || |||| ||||| Sbjct 1527 GCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGACCG 1586 Query 130076 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 130135 ||||| || || |||||||| | |||||| || | || || ||||| ||||||||||| Sbjct 1587 GGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAGATG 1646 Query 130136 CCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGG-AGCGGGA-CTTTGTATCAA 130193 ||||| || ||||| | | ||||||||| | |||| || | | | | ||| Sbjct 1647 CCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTTGCAA 1706 Query 130194 A-CCACTTCATCGCCCACTGCGCCTTTTTCTCGATACACGGGACGGTCTGGATCGCTTCA 130252 | ||| ||| ||||||| ||||| |||| | | || || |||| || || Sbjct 1707 ATCCAGCGCATGGCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGGCCCGG 1766 Query 130253 AAGAGTTCCTTCTTTTCTGAT-GGATCTTTGATGTACTTATCTATGAG 130299 ||||| | | ||| || ||| |||||||| | ||| | || ||||| Sbjct 1767 AAGAGGTGGTCCTTCTC-GATCGGATCTTTAACGTAGGTGTCGATGAG 1813 >seq283 Length=14928 Score = 96.9 bits (106), Expect = 4e-15 Identities = 176/254 (69%), Gaps = 4/254 (2%) Strand=Plus/Minus Query 130049 ATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGACCCCGCTTCTTCAACCAGAAAATC 130108 ||||| || || || ||| || || |||||||| || |||||||| | ||| || || Sbjct 2975 ATGAGCTCGTTGGAAAAGGCGAGGCCGGGCATGAGTCCGCGCTTCTTGAGCCA-AAGATG 2917 Query 130109 GCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACACACGCGAACGCAAAGAGACGCTCA 130168 | || || ||||||||||||||||| ||||| || || ||||| | ||| || || Sbjct 2916 GAGCAGAAGGAGCCAGAGAAGAAGATGCCCTCGACGGCGGCAAACGCCACGAGGCGTTCG 2857 Query 130169 GCAAAGGAG-CGGG--ACTTTGTATCAAACCACTTCATCGCCCACTGCGCCTTTTTCTCG 130225 | || | | || | || | | | |||||| | |||||||| ||||| || | Sbjct 2856 GGGAATGTGTCGAGTCCCTCCTTGGCGATCCACTTGAGCGCCCACTCGGCCTTGCGCTTG 2797 Query 130226 ATACACGGGACGGTCTGGATCGCTTCAAAGAGTTCCTTCTTTTCTGATGGATCTTTGATG 130285 | |||| ||||||| ||| || | ||||| | ||||| || |||||||||| | Sbjct 2796 ACCGACGGCACGGTCTCGATGGCGTTGAAGAGGTGGTTCTTCTCCTGCGGATCTTTGACG 2737 Query 130286 TACTTATCTATGAG 130299 || | || ||||| Sbjct 2736 TAGGTGTCGATGAG 2723 >seq21360 Length=1073 Score = 89.7 bits (98), Expect = 6e-13 Identities = 290/450 (64%), Gaps = 8/450 (2%) Strand=Plus/Minus Query 117837 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATTGAGGAC 117896 || ||||||||||| ||||||||||| |||| |||||| || | ||||| |||| Sbjct 979 CGCAGGTAGTACATGCCCGTCTTGAGGCCCTTGCGCCAGGCGTAGAAGTGCATCGAGGTG 920 Query 117897 AACTTGGA----GAGGGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGAT 117952 | ||||| ||||| | | | |||| ||| ||| | ||| || ||||| Sbjct 919 AGCTTGGCAAACGAGGGCTCGCC----CATGTAGACGTTGAGCGACTGGCTCTGGTCGAT 864 Query 117953 GAAGCGTCCCCGATCCGCCGCCATATCAATCACATCCTTCATCTTGATTTCCCACACAGT 118012 | || || || || ||||| || || | | | | ||||| || || Sbjct 863 GTAGGCCGAGCGGTCGGCGGCCATGTCGATGATGACGCGCTGGGGCAGCTCCCATACCGT 804 Query 118013 CCTGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGATCCACCCGC 118072 | ||||||| ||||| || || || ||||| || |||| |||| || || Sbjct 803 CTTGTAGAGCTTCTTGATGTCGTCAGGGATCTCGTCGATGCGCTGGACCGAGCCGTTGTG 744 Query 118073 CTTGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCAC 118132 || ||| | | ||| | | | |||||||| || | | ||| || || Sbjct 743 CTGGACGAGCTTGTTCTTGAGCTGCGGGGACCAGAGGCCGCGCAGCTGGAGCTCGCGCAA 684 Query 118133 GAGATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGT 118192 || |||| ||||| || || || || || ||| |||| | | ||||| ||||| Sbjct 683 CAGGTGCTCGTTGACGACCGTGAAGTCGCCGGCCAGGATGCGGCGCGTGTAGATGTTGGT 624 Query 118193 CGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCAT 118252 |||||| |||||||||||||| ||||| || | ||| || | || || || || ||||| Sbjct 623 CGTGTAGGGCTCAAAGCACTCGTTGTTGCCGAGGATCTGCGAGGTCGACGCAGTCGGCAT 564 Query 118253 GGGTGCCATGAGAAGGCTGTTACGGAGACC 118282 ||| || | ||| || ||| ||||| || Sbjct 563 GGGCGCGACGAGCAGCGAGTTGCGGAGGCC 534 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618073423138440