Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq960 168 8e-37 seq18213 150 2e-31 seq2671 123 3e-23 seq8173 104 3e-17 seq283 104 3e-17 >seq960 Length=8959 Score = 168 bits (186), Expect = 8e-37 Identities = 497/753 (66%), Gaps = 31/753 (4%) Strand=Plus/Plus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| || ||| ||||| |||| ||| |||| | || Sbjct 7469 CCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGT 7528 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | | ||||| |||||| | | || ||| | |||| ||||| ||||| |||||||| Sbjct 7529 CATCGAGACCTACGACTTGCTCTCGCAACAGCTCTTCACCCACGCCACACCGACCCTCTT 7588 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || | || || | || |||||||| || ||| |||||||| Sbjct 7589 CAACGCCGGCACCCCCCGCCCGCAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGA 7648 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | |||||||| | || || | | |||| || | ||||| |||| ||||| Sbjct 7649 CTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGG 7708 Query 104461 GGGTATTGG----GATGCACATC-CATGATGTGAGAGCCAATAAATCTCGT--ATTCGGG 104513 ||||| || | ||| || | || | | ||| | | ||||| ||||| | Sbjct 7709 CGGTATCGGCGTCGCTGCCCACCGCA-----TCCGCGCC--TCCAACTCGTACATTCGCG 7761 Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573 | || || || || | ||| | | || ||||| ||||| | |||| ||| || | Sbjct 7762 GCACCAACGGCACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCC 7821 Query 104574 GCTATGTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 |||| || | || | | ||| || ||||| | | || ||||||| ||||| | Sbjct 7822 GCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTATCTCGAGCCGT 7881 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG--GC 104688 ||||||| || ||| | || || | ||| | ||||| || | |||||| | Sbjct 7882 GGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACC 7941 Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 ||| | ||||| ||||||| || || ||||| || || |||||||||||| | || || Sbjct 7942 GCGCT--CGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGA 7999 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT 104808 | | ||| | ||||| ||||| || || || |||| || || || | || | Sbjct 8000 GTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTG 8059 Query 104809 GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC--G 104866 ||| |||||||||| | || |||||| || || | ||| | || | Sbjct 8060 GGGCAAGGAGTTTGAGGAGAAGTATGAGCGCTACGAGCTGGAGGGCC--GCGCCCGCCGG 8117 Query 104867 ACGGTGCCAGCTGCC---GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGT 104923 ||| | || ||| || | ||| || || ||| |||| || | ||||||||| Sbjct 8118 GTGGT-CAAG--GCCCAGGAGCTCTGGTTTGCGATCCTCGAGTCGCAGATCGAGACTGGC 8174 Query 104924 ACACCATACATGCTTTACAAAGACGCCTGTAAC 104956 || || |||||||| ||||| |||||||| ||| Sbjct 8175 ACGCCCTACATGCTCTACAAGGACGCCTGCAAC 8207 >seq18213 Length=2148 Score = 150 bits (166), Expect = 2e-31 Identities = 408/615 (66%), Gaps = 22/615 (4%) Strand=Plus/Minus Query 104221 CCCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGT 104280 ||| ||| ||||| ||||||| || ||| ||||| |||| ||| |||| | || Sbjct 668 CCCCCAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGT 609 Query 104281 CTTGGAGACATACGACAAGATGTCCCAAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 | | ||||| |||||| | | || ||| | |||| ||||| || || |||||||| Sbjct 608 CATCGAGACCTACGACTTGCTCTCGCAACAGCTCTTCACCCACGCCACGCCCACCCTCTT 549 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| || || || || | || || | || |||||||| || ||| |||||||| Sbjct 548 CAACGCCGGCACCCCCCGCCCACAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGA 489 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| ||| | |||||||| | || || | | |||| || | ||||| |||| ||||| Sbjct 488 CTCGATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGG 429 Query 104461 GGGTATTGG----GATGCACATC-CATGATGTGAGAGCCAATAAATCTCGT--ATTCGGG 104513 ||||| || | ||| || | || | | ||| | | ||||| ||||| | Sbjct 428 CGGTATCGGCGTCGCTGCCCACCGCA-----TCCGCGCC--TCCAACTCGTACATTCGCG 376 Query 104514 GGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGC 104573 | || || || || || || | | || ||||| ||||| | |||| ||| || | Sbjct 375 GCACCAACGG-CACCTCGAACGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCC 317 Query 104574 GCTATGTAAATCAAGCTG--GGC-GTCGAAAGGGATCTATCGCAGTCTATCTTGAGCCAT 104630 |||| || | || | | ||| || ||||| | | || |||| || ||||| | Sbjct 316 GCTACGTCGACCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTACCTCGAGCCGT 257 Query 104631 GGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAG--GC 104688 ||||||| || ||| | || || | ||| | ||||| || | |||||| | Sbjct 256 GGCACGCCGACATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACC 197 Query 104689 GCGGTGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGA 104748 ||| | ||||| ||||||| || || ||||| || || |||||||||||| | || || Sbjct 196 GCGCT--CGCGACCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGA 139 Query 104749 GGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGT 104808 | | ||| | ||||| ||||| || || || |||| || || || | || | Sbjct 138 GTCTGGCGGCGACTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGACTCGTG 79 Query 104809 GGGTGAGGAGTTTGA 104823 ||| |||||||||| Sbjct 78 GGGCAAGGAGTTTGA 64 >seq2671 Length=7052 Score = 123 bits (136), Expect = 3e-23 Identities = 183/258 (71%), Gaps = 5/258 (2%) Strand=Plus/Minus Query 94702 GAGAAGAAGCAGCTCTTTGAAGCCATCCAAACAGTTCCGTGTATTCAAAAGAAAGCGGAT 94761 |||||| || ||||| | |||||| |||| || || | | | ||||| || || Sbjct 3252 GAGAAGGCCCATCTCTTCAATGCCATCGAAACGGTGCCCTCGGTGAAGAAGAAGGCCGAG 3193 Query 94762 TGGGCTATGAAGTGGTTTGATACAAAGTCGCGTT----CCTTTGCTGAGCGACTCTTCGC 94817 ||||| ||| ||| | | | || |||| ||||||| ||||| ||| | | Sbjct 3192 TGGGCGATGCGATGGATCAACAAGGAGG-GCGTCGACACCTTTGCCGAGCGCCTCGTTGG 3134 Query 94818 ATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAA 94877 || || || ||||| ||||||||||| || |||||||| | || | |||||||| Sbjct 3133 GTTCGCCGCAGTCGAGGGCATCTTCTTCTCGGGCTCCTTCTGTTCCATCTTCTGGCTCAA 3074 Query 94878 GAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGG 94937 ||| || ||||||||||| || ||| ||||||||||||||| ||| || |||||||| Sbjct 3073 GAAACGCGGTCTCATGCCCGGCCTCGCCTTCTCCAACGAGCTCATCAGCCGCGACGAGGG 3014 Query 94938 ACTCCACCAAGAGTTTGC 94955 || ||| |||||||| Sbjct 3013 CCTGCACGCCGAGTTTGC 2996 >seq8173 Length=3122 Score = 104 bits (114), Expect = 3e-17 Identities = 119/160 (74%), Gaps = 0/160 (0%) Strand=Plus/Minus Query 94796 CCTTTGCTGAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCT 94855 |||| | ||||| ||| ||| || || || ||||| ||||||||||| || || | Sbjct 1686 CCTTCCCCGAGCGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTT 1627 Query 94856 TCTGCGCTATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACG 94915 ||||| | || | |||||||||||||| || || ||||| ||||| |||| ||||| Sbjct 1626 TCTGCTCCATCTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACG 1567 Query 94916 AGCTTATCTCTCGTGACGAGGGACTCCACCAAGAGTTTGC 94955 |||||||| || |||||||| || ||| || ||||| Sbjct 1566 AGCTTATCAGCCGCGACGAGGGTCTGCACTGCGACTTTGC 1527 >seq283 Length=14928 Score = 104 bits (114), Expect = 3e-17 Identities = 95/119 (80%), Gaps = 1/119 (1%) Strand=Plus/Plus Query 94804 GAGCGACTCTTCGCATTTGCGTGTGTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCT 94863 || || ||| | || ||||| || ||||| |||||||||||||| ||||||||| | Sbjct 2858 GAACGCCTCGTGGCGTTTGCCGCCGTCGAGGGCATCTTCTTCTCTGGCTCCTTCTGCTCC 2917 Query 94864 ATTTATTGGCTCAAGAAGCGAGGTCTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTAT 94922 || | ||||||||||||||| || |||||||| || ||| ||| ||||||||||| || Sbjct 2918 ATCT-TTGGCTCAAGAAGCGCGGACTCATGCCCGGCCTCGCCTTTTCCAACGAGCTCAT 2975 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582919599722760