Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq19135 98.7 3e-15 seq32341 96.9 1e-14 seq3022 87.8 5e-12 seq2698 87.8 5e-12 seq11217 86.0 2e-11 seq17260 84.2 7e-11 seq17259 84.2 7e-11 seq2423 84.2 7e-11 >seq19135 Length=1020 Score = 98.7 bits (108), Expect = 3e-15 Identities = 167/237 (70%), Gaps = 4/237 (2%) Strand=Plus/Minus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 |||| | |||||||| | | || || || || ||||| ||||| || || || || | Sbjct 256 TTTAGAAGCCACCACGCAGACGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGT 197 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || || || || || || ||||||||||| || || ||||| | Sbjct 196 AGTCGGCCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGT 137 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGAT 140681 | || || || || || || ||||| || ||| || || || || || || | ||| | | Sbjct 136 CCGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCGATGGTATC-GCT 79 Query 140682 GG-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || | |||||||| || || || || || || |||||||| Sbjct 78 GGACTCAACCTCGAGCGTGATCGTCTTTCCCGTAAGGGTCTTGACGAAGATCTGCAT 22 >seq32341 Length=1450 Score = 96.9 bits (106), Expect = 1e-14 Identities = 166/237 (70%), Gaps = 3/237 (1%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 |||| | |||||||| | | || || || || ||||| ||||| || || || || | Sbjct 1044 TTTAGAAGCCACCACGCAGACGAAGGACGAGGTGGAGAGTCGACTCCTTCTGGATGTTGT 1103 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || | | || || || || || || || || ||||||||||| || || ||||| | Sbjct 1104 AGTCGGCCAGCGTGCGGCCGTCCTCGAGCTGCTTGCCAGCAAAGATGAGGCGCTGCTGGT 1163 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAAT-TTTAGCTTTTACATTATCAATCGAATCAGAT 140681 | || || || || || || ||||| || ||| || || || || || || | ||| | Sbjct 1164 CCGGGGGGATGCCCTCCTTGTCCTGGATCTTTTGC-TTCACGTTCTCGATGGTATCGCGT 1222 Query 140682 GG-TTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || || || | |||||||| || || || || || || |||||||| Sbjct 1223 GGACTCAACCTCGAGCGTGATCGTCTTTCCCGTAAGGGTCTTGACGAAGATCTGCAT 1279 >seq3022 Length=6608 Score = 87.8 bits (96), Expect = 5e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 74473 AAAATATTGTATGGAGTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCT 74532 ||||||||| | ||||||| |||||||||||| || || | ||| ||||||||||||| Sbjct 6139 AAAATATTGGACAGAGTGGGGTTCGAACCCACGCGTGTTTCCACACCAGAACTTGAGTCT 6080 Query 74533 ACCCCCTTAGACC-ACTCGGGCATC 74556 |||||| |||| ||||||||||| Sbjct 6079 GGCCCCTTGGACCAACTCGGGCATC 6055 >seq2698 Length=5845 Score = 87.8 bits (96), Expect = 5e-12 Identities = 71/85 (84%), Gaps = 1/85 (1%) Strand=Plus/Minus Query 74473 AAAATATTGTATGGAGTGGGATTCGAACCCACGAGTCTTACGACAGTAGAACTTGAGTCT 74532 ||||||||| | ||||||| |||||||||||| || || | ||| ||||||||||||| Sbjct 3272 AAAATATTGGACAGAGTGGGGTTCGAACCCACGCGTGTTTCCACACCAGAACTTGAGTCT 3213 Query 74533 ACCCCCTTAGACC-ACTCGGGCATC 74556 |||||| |||| ||||||||||| Sbjct 3212 GGCCCCTTGGACCAACTCGGGCATC 3188 >seq11217 Length=1885 Score = 86.0 bits (94), Expect = 2e-11 Identities = 78/96 (81%), Gaps = 3/96 (3%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGGCG--AAAGCCT 423821 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| | || Sbjct 1277 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGGTTTCACCG 1336 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATTTATTATAT 423857 ||||||||| ||||||||||| ||| || || ||| Sbjct 1337 CGTGGGTTCGAACCCCACTCCAGGCAATTTTTCTAT 1372 >seq17260 Length=487 Score = 84.2 bits (92), Expect = 7e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || || |||||||||||||| || || || || || || | |||||||||||| | ||| Sbjct 431 ACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAATGTTCGCCCAACCTCA 372 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATC 140644 || || || || |||||||| || |||||||| || | || | ||| || |||| Sbjct 371 AGCTGCTTCCCGGCAAAGATAAGGCGTTGCTGGTCTGCGGGCACTCCAACTATATC 316 >seq17259 Length=1902 Score = 84.2 bits (92), Expect = 7e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 140529 ACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCA 140588 || || |||||||||||||| || || || || || || | |||||||||||| | ||| Sbjct 1091 ACGAGGTGAAGAGTAGACTCCTTCTGGATGTTGTAGTCTGCCAATGTTCGCCCAACCTCA 1032 Query 140589 AGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGAATTCCTTCTTTATC 140644 || || || || |||||||| || |||||||| || | || | ||| || |||| Sbjct 1031 AGCTGCTTCCCGGCAAAGATAAGGCGTTGCTGGTCTGCGGGCACTCCAACTATATC 976 >seq2423 Length=3800 Score = 84.2 bits (92), Expect = 7e-11 Identities = 75/92 (82%), Gaps = 3/92 (3%) Strand=Plus/Plus Query 423765 AGCATGGATGCCCGAGT-GGTCTAAGGGGGCAGACTTAAGATCTGCTGGCG--AAAGCCT 423821 ||| |||||| |||||| ||||||||| ||||||||||||||||||||| | || Sbjct 3082 AGCCTGGATGGCCGAGTTGGTCTAAGGCGGCAGACTTAAGATCTGCTGGTGGTTTCACCG 3141 Query 423822 CGTGGGTTCAAACCCCACTCCGTGCATTTATT 423853 ||||||||| ||||||||||| ||| || || Sbjct 3142 CGTGGGTTCGAACCCCACTCCAGGCAATTTTT 3173 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1514345834994597