Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_028379.1 Length=205896 Score E Sequences producing significant alignments: (Bits) Value seq7384 87.8 2e-12 seq87 87.8 2e-12 >seq7384 Length=5458 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/126 (77%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 184601 GTTCAGCAGGAGCACCCCCTGGCGCGCCCAGCTGTCGAGGTGGCCGTGGTTGGGCGTCCG 184660 ||| |||| |||||| |||||||||||||| ||||||| |||||| ||||||| | Sbjct 5211 GTTGAGCATGAGCACGCCCTGGCGCGCCCACTCCTCGAGGTAGCCGTGCTTGGGCGGCAC 5270 Query 184661 GAACCCCTCGATGGAGCGT--TGCAGCTCCCTGTAGATGTTGCGCAGCGACGGCGCCACG 184718 ||| |||||||| | ||| || |||||| |||||||||| ||||| |||| | | Sbjct 5271 GAAGCCCTCGAT-GTCCGTACTG-AGCTCCTTGTAGATGTTCTTGAGCGAGGGCGGAAGG 5328 Query 184719 GCCCCG 184724 ||| || Sbjct 5329 GCCACG 5334 >seq87 Length=2233 Score = 87.8 bits (96), Expect = 2e-12 Identities = 97/126 (77%), Gaps = 4/126 (3%) Strand=Plus/Minus Query 184601 GTTCAGCAGGAGCACCCCCTGGCGCGCCCAGCTGTCGAGGTGGCCGTGGTTGGGCGTCCG 184660 ||| |||| |||||| |||||||||||||| ||||||| |||||| ||||||| | Sbjct 248 GTTGAGCATGAGCACGCCCTGGCGCGCCCACTCCTCGAGGTAGCCGTGCTTGGGCGGCAC 189 Query 184661 GAACCCCTCGATGGAGCGT--TGCAGCTCCCTGTAGATGTTGCGCAGCGACGGCGCCACG 184718 ||| |||||||| | ||| || |||||| |||||||||| ||||| |||| | | Sbjct 188 GAAGCCCTCGAT-GTCCGTACTG-AGCTCCTTGTAGATGTTCTTGAGCGAGGGCGGAAGG 131 Query 184719 GCCCCG 184724 ||| || Sbjct 130 GCCACG 125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658353845802240