Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq43583 104 1e-17 seq2350 102 5e-17 seq3640 100 2e-16 seq5953 95.1 8e-15 seq941 95.1 8e-15 seq10788 91.5 9e-14 seq23417 87.8 1e-12 seq13648 86.0 4e-12 seq2664 82.4 5e-11 seq1090 82.4 5e-11 >seq43583 Length=763 Score = 104 bits (114), Expect = 1e-17 Identities = 167/235 (71%), Gaps = 4/235 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | |||||| ||||| ||| |||||| || ||||| || || | Sbjct 273 GCCGCCACGGAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 332 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| ||||| || || ||||| || || | ||||| |||||||| || Sbjct 333 GAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGG 392 Query 34599 CACT-CCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | ||||||||||| ||||||||| || ||| | ||| ||||| | ||| Sbjct 393 GGATGCCCTCCTTGTCCTGGATCTTTTG-CTTCACGTTCTCAATGGTGTCCGAGGACTCG 451 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTG 34710 || || | || || || || ||||| | || ||||| || ||||||| ||||| Sbjct 452 ACCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTTG 506 Score = 84.2 bits (92), Expect = 1e-11 Identities = 143/205 (70%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| |||||||| || || | | || || |||| || || || Sbjct 70 TGGAGAGTCGACTCCTTCTGAATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGC 129 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | ||||| |||||||| || | ||||||||||| |||||| Sbjct 130 TTGCCGGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTC 189 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | ||| ||||| ||| || || | || ||||| ||||| || Sbjct 190 TG-CTTCACGTTCTCAATGGTGTCGGACGACTCGACCTCGAGCGTGATCGTCTTACCCGT 248 Query 34683 TAACGTTTTCACAAAAATCTGCATG 34707 | || || || || ||||||||| Sbjct 249 AAGGGTCTTGACGAAGATCTGCATG 273 >seq2350 Length=2056 Score = 102 bits (112), Expect = 5e-17 Identities = 170/243 (70%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | |||||| ||||| ||| |||||| || ||||| || || | Sbjct 65 GCCGCCACGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 124 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || || || || || || | |||||| ||||| ||||| Sbjct 125 GAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGACGCTGCTGGTCGGGCGG 184 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||||| || || ||| | ||| ||||| | ||| | Sbjct 185 GATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCAATGGTGTCCGAGGACTCGA 243 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA----TGTTGATT 34713 | || | || || || || ||||| | || ||||| || ||||||| ||||| || Sbjct 244 CCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTTGTTGCTT 303 Query 34714 GTA 34716 ||| Sbjct 304 GTA 306 >seq3640 Length=10544 Score = 100 bits (110), Expect = 2e-16 Identities = 165/234 (71%), Gaps = 3/234 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | |||||| ||||| ||| |||||| || ||||| || || | Sbjct 10440 GCCGCCACGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 10381 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| ||||| || || ||||| || || | ||||| ||||| || || Sbjct 10380 GAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGG 10321 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||||| || || ||| | ||| ||||| | ||| | Sbjct 10320 GATGCCCTCCTTGTCCTGAATCTTCTG-CTTCACGTTCTCAATGGTGTCCGAGGACTCGA 10262 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTG 34710 | || | || || || || ||||| | || ||||| || ||||||| ||||| Sbjct 10261 CCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTTG 10208 >seq5953 Length=2772 Score = 95.1 bits (104), Expect = 8e-15 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | |||||| ||||| ||| |||||| || ||||| || || | Sbjct 2468 GCCGCCACGCAGACGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGC 2409 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| ||||| || || ||||| || || | ||||| ||||| || || Sbjct 2408 CAGGGTACGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGAGG 2349 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||||| || || ||| | || ||||| | ||| | Sbjct 2348 GATGCCCTCCTTGTCCTGAATCTTCTG-CTTCACGTTCTCGATGGTGTCCGAGGACTCGA 2290 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | || | || || || || ||||| | || ||||| || |||||||| Sbjct 2289 CCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 2241 Score = 87.8 bits (96), Expect = 1e-12 Identities = 146/206 (71%), Gaps = 4/206 (2%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| || || | || || || |||| || || || Sbjct 2671 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCGAGCTGC 2612 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | ||||| |||||||| || | ||||||||||| |||||| Sbjct 2611 TTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTC 2552 Query 34624 TGTTTTAACGAT-AAAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCGTTTTACCGG 34681 || || ||| | || ||||| ||| ||| || || | || ||||| ||||| | Sbjct 2551 TG-CTTCACGTTCTCGATCGTGTCGCTCG-ACTCGACCTCGAGCGTGATCGTCTTACCCG 2494 Query 34682 TTAACGTTTTCACAAAAATCTGCATG 34707 | | || || || || ||||||||| Sbjct 2493 TAAGGGTCTTGACGAAGATCTGCATG 2468 >seq941 Length=7582 Score = 95.1 bits (104), Expect = 8e-15 Identities = 153/216 (71%), Gaps = 3/216 (1%) Strand=Plus/Minus Query 34497 CACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTC 34556 |||||| ||||| ||| |||||| || ||||| || || | || || || |||| || Sbjct 7577 CACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTC 7518 Query 34557 AAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGT 34616 || || || ||||| || || | ||||| ||||| ||||| | ||||||||||| Sbjct 7517 GAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGGGATGCCCTCCTTGTCCTG 7458 Query 34617 GATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTT 34675 |||||| || || ||| | ||| ||||| | ||| || || | || || || | Sbjct 7457 GATCTTCTG-CTTCACGTTCTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCT 7399 Query 34676 TACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTG 34710 | ||||| | || ||||| || ||||||| ||||| Sbjct 7398 TGCCGGTGAGAGTCTTCACGAAGATCTGCATTGTTG 7363 >seq10788 Length=3043 Score = 91.5 bits (100), Expect = 9e-14 Identities = 159/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | |||||| ||||| ||| |||||| || ||||| || || | Sbjct 2280 CCGCCACGCAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 2339 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || || || |||| || || || || || ||||| || | ||||| |||||||| || Sbjct 2340 AGCGTGCGACCGTCCTCGAGCTGCTTGCCCGCAAAGATGAGGCGCTGCTGGTCCGGGGGG 2399 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| ||||| || || ||| | ||| ||||| ||| || Sbjct 2400 ATACCCTCCTTGTCCTGAATCTTCTG-CTTCACGTTCTCAATGGTGTCGGACGACTCGAC 2458 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || ||||| ||||| || | || || || || ||||||||| Sbjct 2459 CTCGAGCGTGATCGTCTTACCCGTAAGGGTCTTGACGAAGATCTGCATG 2507 Score = 87.8 bits (96), Expect = 1e-12 Identities = 167/243 (69%), Gaps = 6/243 (2%) Strand=Plus/Plus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | || || | |||||| ||||| ||| |||||| || ||||| || || | Sbjct 2507 GCCGCCACGGAGGCGAAGCACCAAGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCAGC 2566 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || | || || || || || || || || || | ||||| |||||||| || Sbjct 2567 GAGGGTACGGCCATCCTCGAGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGG 2626 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| |||||| || || ||| | || ||||| | ||| | Sbjct 2627 GATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATCGTGTCCGAGGACTCGA 2685 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA----TGTTGATT 34713 | || | || || || || ||||| | || ||||| || ||||||| ||||| || Sbjct 2686 CCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCATTGTTGTTGCTT 2745 Query 34714 GTA 34716 ||| Sbjct 2746 GTA 2748 >seq23417 Length=955 Score = 87.8 bits (96), Expect = 1e-12 Identities = 166/239 (69%), Gaps = 4/239 (2%) Strand=Plus/Minus Query 34479 GCCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGA 34538 |||||| | ||||| | || | || ||||| |||||| || ||||| || || | Sbjct 825 GCCGCCACGCAGACGGAGGACGAGGTGAAGAGTTGACTCCTTCTGGATGTTGTAGTCAGC 766 Query 34539 AAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGG 34598 || || || |||| ||||| || || ||||| || || | ||||| ||||| ||||| Sbjct 765 GAGCGTGCGGCCGTCCTCAAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCGG 706 Query 34599 CACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCA 34657 | ||||||||||| ||||| || || ||| | ||| ||||| | ||| | Sbjct 705 GATGCCCTCCTTGTCCTGAATCTTCTG-CTTCACGTTCTCAATCGTGTCCGAGGACTCGA 647 Query 34658 CTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCA-TGTTGATTGT 34715 | || | || || || || ||||| | || ||||| || ||||||| ||||| |||| Sbjct 646 CCTCAAGCGTAATGGTCTTGCCGGTGAGAGTCTTCACGAAGATCTGCATTGTTG-TTGT 589 >seq13648 Length=1701 Score = 86.0 bits (94), Expect = 4e-12 Identities = 160/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 34480 CCGCCTCTA-AGACGCAACACCAAATGGAGAGTGCTCTCCTTT-TGAATGTTATAATCTG 34537 ||||| || || || | |||||| ||||| ||| |||| || || ||||| || || | Sbjct 1341 CCGCCACTGCAGGCGAAGCACCAAGTGGAGGGTGGACTCCCTTCTGGATGTTGTAGTCAG 1282 Query 34538 AAAGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCG 34597 || || || |||| || || || || ||||| || || | ||||| ||||| |||| Sbjct 1281 CGAGGGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATGAGGCGCTGCTGGTCGGGCG 1222 Query 34598 GCACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCC 34656 | | ||||||||||| ||||| || || ||| | ||| ||||| | ||| Sbjct 1221 GGATGCCCTCCTTGTCCTGAATCTTCTG-CTTCACGTTCTCAATGGTGTCCGAGGACTCG 1163 Query 34657 ACTTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || || | || || || || ||||| | || ||||| || |||||||| Sbjct 1162 ACCTCGAGCGTAATGGTCTTGCCGGTGAGGGTCTTCACGAAGATCTGCAT 1113 Score = 82.4 bits (90), Expect = 5e-11 Identities = 142/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 |||||||| |||||| || ||||| || || | || || || |||| || || || Sbjct 1545 TGGAGAGTCGACTCCTTCTGGATGTTGTAGTCGGCCAGGGTACGACCGTCCTCGAGCTGC 1486 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || |||||||| || | ||||| |||||||| || | ||||||||||| |||||| Sbjct 1485 TTGCCGGCAAAGATGAGGCGCTGCTGGTCCGGGGGGATACCCTCCTTGTCCTGGATCTTC 1426 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | ||| ||||| | ||| || || | || || || || || || Sbjct 1425 TG-CTTCACGTTCTCAATGGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCAGT 1367 Query 34683 TAACGTTTTCACAAAAATCTGCAT 34706 | || || || || |||||||| Sbjct 1366 CAGAGTCTTGACGAAGATCTGCAT 1343 >seq2664 Length=7344 Score = 82.4 bits (90), Expect = 5e-11 Identities = 150/216 (69%), Gaps = 3/216 (1%) Strand=Plus/Plus Query 34504 TGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCTTCAAGTTGT 34563 ||||| || |||||| || ||||| || || | || || || | || || || || Sbjct 1422 TGGAGGGTAGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCATCCTCGAGCTGC 1481 Query 34564 TTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCTGTGATCTTT 34623 || ||||| || || | |||||| |||||||| || | |||||||||||| |||||| Sbjct 1482 TTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGAATTCCCTCCTTGTCCTGGATCTTC 1541 Query 34624 TGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCACTTCCACGGTTATCGTTTTACCGGT 34682 || || ||| | ||| ||||| ||| || || | ||| || || || || || Sbjct 1542 TG-CTTGACGTTCTCAATAGTGTCCGAAGACTCGACCTCGAGGGTGATGGTCTTGCCAGT 1600 Query 34683 TAACGTTTTCACAAAAATCTGCATGTTGATTGTATG 34718 | || || || || || ||||||||| ||| ||| Sbjct 1601 AAGGGTCTTGACGAAGATTTGCATGTTG-TTGGATG 1635 >seq1090 Length=10094 Score = 82.4 bits (90), Expect = 5e-11 Identities = 157/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 ||||| | || || | |||||| || || ||| |||||| || ||||| || || | Sbjct 7548 CCGCCACGGAGGCGAAGCACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCGGCC 7607 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | || || | || || || || || ||||| || || | |||||| |||||||| || Sbjct 7608 AAGGTACGGCCATCCTCGAGCTGCTTGCCGGCGAAGATGAGACGCTGCTGGTCCGGGGGA 7667 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||||||||| |||||| || || ||| | || ||||| ||| || Sbjct 7668 ATGCCCTCCTTGTCCTGGATCTTCTG-CTTCACGTTCTCGATGGTGTCGGACGACTCGAC 7726 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATG 34707 || | || ||||| ||||| || | || || || || ||||||||| Sbjct 7727 CTCGAGCGTGATCGTCTTACCCGTAAGGGTCTTGACGAAGATCTGCATG 7775 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314550089940167