Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq5953 104 2e-17 seq13648 98.7 7e-16 >seq5953 Length=2772 Score = 104 bits (114), Expect = 2e-17 Identities = 141/197 (72%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || ||||| ||||| || |||||||| ||||| || || || | Sbjct 2469 ATGCAGATCTTCGTCAAGACCCTTACGGGTAAGACGATCACGCTCGAGGTCGAGTCGAGC 2528 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | || | | || || || || ||||| || ||| | || || || || Sbjct 2529 GACACGATCGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 2588 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || |||| || || | | ||| |||||| Sbjct 2589 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCCGACTACAAC 2648 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 2649 ATCCAGAAGGAGTCGAC 2665 >seq13648 Length=1701 Score = 98.7 bits (108), Expect = 7e-16 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 |||||||| ||||| || || || || || || || || || ||||| || || ||| || Sbjct 1343 ATGCAGATCTTCGTCAAGACTCTGACTGGCAAGACCATTACGCTCGAGGTCGAGTCCTCG 1402 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| |||| | | || || || || ||||| || ||| | || || || || Sbjct 1403 GACACCATTGAGAACGTGAAGCAGAAGATCCAGGACAAGGAGGGTATCCCCCCGGACCAG 1462 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||||| | || ||||||||||| || || || |||| || || | | ||| |||||| Sbjct 1463 CAGCGCCTCATCTTTGCCGGCAAGCAGCTCGAGGACGGTCGTACCCTGGCCGACTACAAC 1522 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || ||||| || Sbjct 1523 ATCCAGAAGGAGTCGAC 1539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337816811893892