Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_030656.1 Length=133492 Score E Sequences producing significant alignments: (Bits) Value seq283 95.1 1e-14 >seq283 Length=14928 Score = 95.1 bits (104), Expect = 1e-14 Identities = 273/415 (66%), Gaps = 5/415 (1%) Strand=Plus/Minus Query 4281 TCGAAGAAATTAGTTTTGCCTTCTAACGAAATATTTTCCATAAAATCAAACGGATTAGTT 4340 || ||||| || || ||||| || | || || ||||| | || ||||| ||| Sbjct 3278 TCAAAGAAGTTGGTCTTGCCCTCGAGTGAGATGAGCTCCATCCACGGGAAGGGATTCGTT 3219 Query 4341 GCGTTGTAATGTTTTTCACACTTTAGAGCTACAAGCAATCGGTCAGCTACAAATTCTATA 4400 | |||||| || || || || || || |||| || || || || ||||| ||| Sbjct 3218 GAGTTGTAGTGCTTGGGGCATCCGAGGGCCACCAGCAGGCGATCGGCCACGAATTCGATA 3159 Query 4401 TACTGGCTCATGAGTTCGCAGTTAATTCCAATTAATCTCACAGGTAGCGCGTATGTCAAA 4460 ||||| | |||||| || ||| || || || | ||| || |||| | ||| | | Sbjct 3158 TACTGACACATGAGCCCGGCGTTCATGCCGATGAGCGACACCGGCAGCGATTCTGTGACA 3099 Query 4461 AACTCTTGTTCTATAGTTACGGCTTCTGTGATTATATCTTTTATTTTATCTTTAGATGGT 4520 ||||| | || || |||||||| ||| || | || || || ||| Sbjct 3098 AACTCCTTCTCAATCTCGACGGCTTCGAGGATGATCTGCTTGGGCACGTCCACCGAGGGT 3039 Query 4521 TTATTTACTAAGTATCCAA-ACAATAAACACGCAAAATCACAATGCAAACCTTCGTCTCT 4579 || || || | | || | | | | || ||||| || ||||| ||||| |||| Sbjct 3038 TTGTTGACGA-GCATGCTGTAGAGGAGGCAGGCAAAGTCGGCATGCATCCCTTCATCTCG 2980 Query 4580 GCTAATCAGTTCGTTAGAAAACGTTAATCCGGGCATTAAACCTCTCTTTTTAAGCCAAA- 4638 ||||| || ||||| ||||| | | |||||||| | || | ||| || ||||||| Sbjct 2979 ACTAATGAGCTCGTTGGAAAAGGCGAGGCCGGGCATGAGTCCGCGCTTCTTGAGCCAAAG 2920 Query 4639 ATATAGCGGCAAATGACCCAGAAAAGAATATGCCTTCTACGGCGGCAAACGCTAC 4693 || ||| | || || ||||| ||||| ||||| || |||||||||||||| || Sbjct 2919 ATGGAGCAG--AAGGAGCCAGAGAAGAAGATGCCCTCGACGGCGGCAAACGCCAC 2867 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 426806026789067