Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002105255.1_202017-04- 21] 46,799 sequences; 74,697,533 total letters Query= NC_031038.1 Length=222832 Score E Sequences producing significant alignments: (Bits) Value seq2671 113 6e-20 >seq2671 Length=7052 Score = 113 bits (124), Expect = 6e-20 Identities = 350/542 (65%), Gaps = 6/542 (1%) Strand=Plus/Plus Query 46645 TGAAGGCCTTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGCCCAGGCATTAGTCCA 46704 || ||||| || || | || || | ||||| || || | ||| || ||||| || || Sbjct 3008 TGCAGGCCCTCGTCGCGGCTGATGAGCTCGTTGGAGAAGGCGAGGCCGGGCATGAGACCG 3067 Query 46705 CGCTTTTTGAGCCAAAATATAGCCGCGAAAGATCCAGAAAAGAATATGCCTTCTACAGCC 46764 || || |||||||| || || | ||| || || || ||||| ||||| || || || Sbjct 3068 CGTTTCTTGAGCCAGAAGATGGAACAGAAGGAGCCCGAGAAGAAGATGCCCTCGACTGCG 3127 Query 46765 GCGAATGCGACAAGTCTCTCTCCGTAACTGGCA------TCATTATGAATCCACCTTTGA 46818 ||||| | || || | ||| | | || | || || | ||||| | Sbjct 3128 GCGAACCCAACGAGGCGCTCGGCAAAGGTGTCGACGCCCTCCTTGTTGATCCATCGCATC 3187 Query 46819 GCCCAATCAGCCTTTTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGAAAGttt 46878 ||||| || ||||| ||||| || | |||| ||||| || ||||| |||||| | Sbjct 3188 GCCCACTCGGCCTTCTTCTTCACCGAGGGCACCGTTTCGATGGCATTGAAGAGATGGGCC 3247 Query 46879 ttttCATCACTATCTTTAACATATGTATCTATTAAAAGACTATACATTTCTGAATGAATG 46938 || || | || || || || ||||| | | || || | ||||| || ||| Sbjct 3248 TTCTCGACGGGGTCCTTGACGTAGGTATCCAGGAGGAGCGAGTAGGTCTCTGAGTGGATG 3307 Query 46939 TTTTCAATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATCTGTACCTCTGTA 46998 || || || || || || || || || || |||| ||| || | | || |||||| | Sbjct 3308 TTCTCGATGGCTATTTGGAAGCCATAGAAGCATCGTGCCTCGGGCACTTGCACCTCTTTC 3367 Query 46999 CAAAATCGTTCAGACAAATTCTCATTCACTATTCCATCACTAGCAGCAAAAAATGCCAAT 47058 || || | | ||| ||||| ||| || || || ||||| ||||| ||||||| Sbjct 3368 ATGAAGCGACCGGCCAAGTTCTCCGCCACAATGCCGTCGCTAGCGGCAAAGAATGCCAGA 3427 Query 47059 ACATGTTTAATAAAATATTTTTCATCGGTAGTCAGTTTATTCCAGTCATTGATATCTTTT 47118 || || || || || | | ||| || | | || | ||||| || || || | Sbjct 3428 ACGTGCTTGATGAAGTGCTGTTCGTCAGCTGAGAGAGATTGCCAGTGCTTCATGTCGTCG 3487 Query 47119 GATATATCTACTTCTTCAGCTGTCCAGAATGACGCCTCTGCTTTTTTATACATATTCCAT 47178 | ||| || || || ||||||||||| || ||||| || || || ||||| | ||| Sbjct 3488 CCGAGATCGACCTCCTCGGCTGTCCAGAAGGAGGCCTCGGCCTTCTTGTACATCTCCCAG 3547 Query 47179 AT 47180 || Sbjct 3548 AT 3549 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 712517342287680