Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_001266.1 Length=159857 Score E Sequences producing significant alignments: (Bits) Value seq6640 109 6e-19 seq803 100 3e-16 >seq6640 Length=3469 Score = 109 bits (120), Expect = 6e-19 Identities = 305/465 (66%), Gaps = 5/465 (1%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || |||||||| || || || ||||| | ||||||||| |||||| || | Sbjct 2305 AGGCAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCA 2246 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| || || ||||| | |||||| || | |||| || || || || || Sbjct 2245 AGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAAGAGCCGGAGAA 2187 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC---ATCTTT 16374 ||| || ||||| || | || || |||| | || || | | | || | | | | Sbjct 2186 GAAGATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTC 2127 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || | |||||| | |||| ||||| || | || | | || || || || Sbjct 2126 CTTGCAAATCCAGCGCATGGCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCAT 2067 Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 |||| || | | || || || ||| | | || || || || || | Sbjct 2066 GGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGA 2007 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 ||||||||| ||||| |||||||| || || ||||| || || |||||||| || ||||| Sbjct 2006 GTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTC 1947 Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | | || |||||| || || | ||||||||||| |||||||| || || Sbjct 1946 GGGCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATACCATCGCT 1887 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTC 16659 || || || || |||| | |||||| ||||| | |||||||| Sbjct 1886 GGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTTTCGTC 1842 >seq803 Length=10940 Score = 100 bits (110), Expect = 3e-16 Identities = 303/465 (65%), Gaps = 5/465 (1%) Strand=Plus/Minus Query 16199 AGACACGCGAAGTCGCAATGTAGTCCTTCGTCTCTGCTGATAAGTTCGTTGGAAAAAGTT 16258 || || || |||||||| || || || ||||| | ||||||||| |||||| || | Sbjct 2311 AGGCAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCA 2252 Query 16259 AACCCTGGCATTTTTCCTCGTTTCTTTAACCAGAATATCGCAGCA-AATGACCCCGAAAA 16317 | || ||||| || || ||||| | |||||| || | |||| || || || || || Sbjct 2251 AGACCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGG-AGCAGAAAGAGCCGGAGAA 2193 Query 16318 GAATATACCCTCAACAGATGCAAAAGCGATTAATCGTTCCGCGTACGTAGC---ATCTTT 16374 ||| || ||||| || | || || |||| | || || | | | || | | | | Sbjct 2192 GAAGATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTC 2133 Query 16375 ATTACGAATCCATTTCTGTACCCATTCGGCTTTTTGTTTTATACAATCCATCGTTTCTAT 16434 || | |||||| | |||| ||||| || | || | | || || || || Sbjct 2132 CTTGCAAATCCAGCGCATGGCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCAT 2073 Query 16435 GGCCTTAAACAATTTCTCTTTTTCCTGAATATCGATTATATACGTATCAATCAGTAAACT 16494 |||| || | | || || || ||| | | || || || || || | Sbjct 2072 GGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGA 2013 Query 16495 GTACATTTCTGAGTGTATGTTCTCTATGGCTATCTGAAATCCATAGAAGCATCGAGCCTC 16554 ||||||||| ||||| |||||||| || || ||||| || || |||||||| || ||||| Sbjct 2012 GTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTC 1953 Query 16555 CGCTATTTGTACTTCCACGTAAAATCGTTCCGCCAGGTTCTCATTCACGATACCGTCACT 16614 | | || |||||| || || | ||||||||||| ||||| || || || Sbjct 1952 GGGCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGCT 1893 Query 16615 TGCAGCAAAAAACGCCAATATGTGCTTAATGAAATATTTTTCGTC 16659 || || || || |||| | |||||| ||||| | || ||||| Sbjct 1892 GGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC 1848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 511345723438760