Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_001611.1 Length=185578 Score E Sequences producing significant alignments: (Bits) Value seq6640 123 3e-23 seq803 123 3e-23 >seq6640 Length=3469 Score = 123 bits (136), Expect = 3e-23 Identities = 371/564 (66%), Gaps = 18/564 (3%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || |||||||| ||||||||||| | || || | |||||| || | || Sbjct 2302 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 2243 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || ||||| Sbjct 2242 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 2184 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC--------TCCATA-ACCGGCGCT 24304 || || || || || || ||| | || || | || || | ||| | | Sbjct 2183 GATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTT 2124 Query 24305 GTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 | | ||||| | || ||||| ||||||||||| || || | |||| ||||| | Sbjct 2123 GCAA---ATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCA 2068 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 | || ||||| | || || || | ||||||||| || || || || | || Sbjct 2067 TGGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCG 2008 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 ||||||||||| || ||||| || || || || || || |||||||| || | |||| Sbjct 2007 AGTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCT 1948 Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 ||| | ||| ||||| | || || | || | || || || || || || | Sbjct 1947 CGGGCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATACCATCGC 1888 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG-TTAGTTTA 24602 |||| || || || |||| || || || || || | |||||||| | || | || | Sbjct 1887 TGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTTTCGTC-GTTGCTGAGCGAA 1829 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 ||| | || || || | ||| || || || | ||||| || || ||||| Sbjct 1828 GCCCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCG 1769 Query 24663 GCCTTTTTATACATATTCCAGATG 24686 ||||| || ||||| | ||| ||| Sbjct 1768 GCCTTCTTGTACATCTCCCAAATG 1745 >seq803 Length=10940 Score = 123 bits (136), Expect = 3e-23 Identities = 371/564 (66%), Gaps = 18/564 (3%) Strand=Plus/Minus Query 24135 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 24194 || || || |||||||| ||||||||||| | || || | |||||| || | || Sbjct 2308 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 2249 Query 24195 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 24253 |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || ||||| Sbjct 2248 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 2190 Query 24254 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTTTC--------TCCATA-ACCGGCGCT 24304 || || || || || || ||| | || || | || || | ||| | | Sbjct 2189 GATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTT 2130 Query 24305 GTCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTA 24363 | | ||||| | || ||||| ||||||||||| || || | |||| ||||| | Sbjct 2129 GCAA---ATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCA 2074 Query 24364 TAGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGAC 24423 | || ||||| | || || || | ||||||||| || || || || | || Sbjct 2073 TGGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCG 2014 Query 24424 TATACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCT 24483 ||||||||||| || ||||| || || || || || || |||||||| || | |||| Sbjct 2013 AGTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCT 1954 Query 24484 CGGTAATCTGTACTTCTATACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCAC 24543 ||| | ||| ||||| | || || | || | || || || || || || | Sbjct 1953 CGGGCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGC 1894 Query 24544 TGGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTA 24602 |||| || || || |||| || || || || || | || ||||| | |||| || | Sbjct 1893 TGGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC-GTTGTTGAGCGAA 1835 Query 24603 TTCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCT 24662 ||| | || || || | ||| || || || | ||||| || || ||||| Sbjct 1834 GCCCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCG 1775 Query 24663 GCCTTTTTATACATATTCCAGATG 24686 ||||| || ||||| | ||| ||| Sbjct 1774 GCCTTCTTGTACATCTCCCAAATG 1751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 593641870610640