Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq79 165 2e-35 seq3619 156 9e-33 seq4677 96.9 7e-15 seq552 96.9 7e-15 >seq79 Length=69635 Score = 165 bits (182), Expect = 2e-35 Identities = 586/905 (65%), Gaps = 18/905 (2%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 || || || || ||| || || ||| || || || | ||||||||| || || Sbjct 65601 TTTAAGACCCTCGAGCGGTCTTACCTCTTCCGGATCGACGACAAGATCGTCGAGCGCCCC 65660 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || || ||||| |||||| ||| |||| ||| || Sbjct 65661 CAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGTCATC 65720 Query 248953 GAGACGTACACCGGAATGAGTGAAC-GCTGGATGACACATGCCACACCGACGCTCTTCAA 249011 ||||| ||| | | ||| ||| | || || |||||||| || |||||||| Sbjct 65721 GAGACCTACGACTTGCTCTCGCAACAGCTCT-TCACCCACGCCACACCCACCCTCTTCAA 65779 Query 249012 CGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTC 249071 |||||| ||| | | ||||| |||||||| || || ||||| | || ||||| Sbjct 65780 CGCCGGCACCCCCCGCCCGCAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGACTC 65839 Query 249072 TGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGG 249131 |||| || || || |||||||| || ||| || || || || | || ||||| Sbjct 65840 GATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGGCGG 65899 Query 249132 AATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGG 249191 ||||| || | | | | |||||| || |||||||| || || || || Sbjct 65900 TATCGGCGTCGCTGCCCACCGCATCCGCGCCTCCAACTCGTACATTCGCGGCACCAACGG 65959 Query 249192 GGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAA 249251 | | ||| |||| || | || || || | ||| ||| | | | || | Sbjct 65960 CACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCCGCTACGTCGA 66019 Query 249252 CCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGA 249308 ||||| ||| || || ||||| | || ||||| || | || |||||||||||| Sbjct 66020 CCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTACCTCGAGCCGTGGCACGCCGA 66079 Query 249309 TATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGA 249368 || || || || |||| | || |||||| ||||||| ||| | | || || || Sbjct 66080 CATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACCGCGCTCGCGA 66139 Query 249369 CCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGA 249428 ||||||||||||||||||| || ||||| | |||||| |||||| || | | |||||| Sbjct 66140 CCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAGTCTGGCGGCGA 66199 Query 249429 TTGGACGCTTCTTTCTCCGTCCGACGCCCCGGACCTCATCGATCTACACGGCGC--CGAC 249486 ||| |||| | | || ||| || || | ||| | || || | || || || Sbjct 66200 CTGGTCGCTCTTCTGCCCCAACGAGGCGCCCGGCCTGTTTGA-CT-CGTGGGGCAAGGAG 66257 Query 249487 TTCGACCAAGCCTATAAGAAATACGAATCCAACGGCATCG---GCAAGACAATCAAGGCT 249543 || || | ||| || ||||| | ||| || || | ||||||| Sbjct 66258 TTTGAGGAGAAGTATGAGCGCTACGAGCTGGAGGGCCGCGCCCGCCGGGTGGTCAAGGCC 66317 Query 249544 C-GGACCCTT--TTTGCGAAGGTGGTGGAGTCCCAGATAGAGACAGGGGGGCCGTATTAT 249600 | ||| | || ||||||| | | ||||| ||||| ||||| || ||| || Sbjct 66318 CAGGAGCTTTGGTTTGCGA---TCCTCGAGTCGCAGATCGAGACTGGCACGCCCTACATG 66374 Query 249601 TTGTTCAAAGACGCGTGCAACGCCAAGAGTAACCAACGGCATCTTGGTACCATCCGCTCG 249660 | | ||| ||||| |||||| |||| ||||| | ||| || || || |||| ||| Sbjct 66375 CTCTACAAGGACGCCTGCAACAGCAAGTCGAACCAGCAGCACCTGGGCACGATCCAGTCG 66434 Query 249661 TCAAATCTCTGTGCAGAGGTGATTCAATACTCGTCCAAGGAGGAGATTGCCGTCTGCAAC 249720 || || || ||| | ||||| || || ||| | || || || | ||||| |||||| Sbjct 66435 TCGAACCTGTGTACGGAGGTCATCCAGTACACCTCGCCCGACGAAGTGGCCGTGTGCAAC 66494 Query 249721 CTGGC 249725 ||||| Sbjct 66495 CTGGC 66499 >seq3619 Length=11060 Score = 156 bits (172), Expect = 9e-33 Identities = 402/609 (66%), Gaps = 5/609 (1%) Strand=Plus/Plus Query 248833 TTCAAAACGCTGGAGAAATCGTATCTCCTCAAAATTGATGGCAAGATCGTGGAACGAATT 248892 || || || || ||| || || ||| || || || | ||||||||| || || Sbjct 7097 TTTAAGACCCTCGAGCGGTCTTACCTCTTCCGGATCGACGACAAGATCGTCGAGCGCCCC 7156 Query 248893 CAGCACATGTTGATGCGAGTGGCTGTCGGGATTCACAAGGATGACATAGAGAGCGTGCTC 248952 ||||||||| | ||||| || || ||||| |||||| ||| |||| ||| || Sbjct 7157 CAGCACATGCTCATGCGTGTTGCCGTCGGTCTTCACATGGACAACATCCCCGCCGTCATC 7216 Query 248953 GAGACGTACACCGGAATGAGTGAAC-GCTGGATGACACATGCCACACCGACGCTCTTCAA 249011 ||||| ||| | | ||| ||| | || || ||||| || || |||||||| Sbjct 7217 GAGACCTACGACTTGCTCTCGCAACAGCTCT-TCACCCACGCCACGCCCACCCTCTTCAA 7275 Query 249012 CGCCGGTACCGTCAACAATCAGCTGAGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTC 249071 |||||| ||| | | ||||| |||||||| || || ||||| | || ||||| Sbjct 7276 CGCCGGCACCCCCCGCCCACAGCTTTCGTCGTGCTTCCTCCTCACCATGAAGGAGGACTC 7335 Query 249072 TGTCGACGGCATTTATGACACGCTTAAACAGACGGCGAAGATTTCTAAATTCGCGGGCGG 249131 |||| || || || |||||||| || ||| || || || || | || ||||| Sbjct 7336 GATCGAGGGTATCTACGACACGCTCAAGCAGTGCGCCCTCATCTCCAAGTCAGCTGGCGG 7395 Query 249132 AATCGGTCTCTCCGTCTCCAACATCCGAGCGAAGGGTTCGTACATCAAAGGTACAAATGG 249191 ||||| || | | | | |||||| || |||||||| || || || || Sbjct 7396 TATCGGCGTCGCTGCCCACCGCATCCGCGCCTCCAACTCGTACATTCGCGGCACCAACGG 7455 Query 249192 GGTCAGTGATGGTATCGTACCCCTCCTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAA 249251 | | ||| |||| || | || || || | ||| ||| | | | || | Sbjct 7456 CACCTCGAACGGTCTCGTCCCGATGCTGCGCGTCTACAACGACACTGCCCGCTACGTCGA 7515 Query 249252 CCAGGCCGGGCGC---CGAAAGGGGTCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGA 249308 ||||| ||| || || ||||| | || ||||| ||| | || |||||||||||| Sbjct 7516 CCAGGGCGGCGGCAAGCGCAAGGGCGCCTTTGCCATCTATCTCGAGCCGTGGCACGCCGA 7575 Query 249309 TATATTGGAGTTCCTGGACTTGAAAAAGAACAACGGCAACGAGCTCATGAGAGCGCGTGA 249368 || || || || |||| | || |||||| ||||||| ||| | | || || || Sbjct 7576 CATCTTTGACTTTTTGGAGCTCAAGAAGAACCACGGCAAGGAGGAGAACCGCGCTCGCGA 7635 Query 249369 CCTCTTCTACGGCCTGTGGGTCTCCGACTTGTTCATGCGCCGCGTCAAGGCCGACGGCGA 249428 ||||||||||||||||||| || ||||| | |||||| |||||| || | | |||||| Sbjct 7636 CCTCTTCTACGGCCTGTGGATCCCCGACCTCTTCATGAAGCGCGTCGAGTCTGGCGGCGA 7695 Query 249429 TTGGACGCT 249437 ||| |||| Sbjct 7696 CTGGTCGCT 7704 >seq4677 Length=7956 Score = 96.9 bits (106), Expect = 7e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| | ||||||| | ||||| || ||||| || |||||||| ||||||||||| Sbjct 1091 TGCCCGCCCTACAAGCTCATCATCCTTGATGAGGCCGATTCCATGACGCCCGACGCGCAG 1032 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 |||||||||| || | || |||| |||| || ||||| || ||| || | ||| Sbjct 1031 GCCGCCCTCCGACGTATCATCGAGAACTACTCTCGAGTCACGCGCTTCTGCTTGATCTGC 972 Query 254322 AACTACGT 254329 |||||||| Sbjct 971 AACTACGT 964 >seq552 Length=108645 Score = 96.9 bits (106), Expect = 7e-15 Identities = 98/128 (77%), Gaps = 0/128 (0%) Strand=Plus/Minus Query 254202 TGTCCGCCTTTCAAGCTCGTGATCCTGGACGAGGCGGACACCATGACGGCCGACGCGCAG 254261 || ||||| | ||||||| | ||||| || ||||| || |||||||| ||||||||||| Sbjct 45418 TGCCCGCCCTACAAGCTCATCATCCTTGATGAGGCCGATTCCATGACGCCCGACGCGCAG 45359 Query 254262 TCCGCCCTCCGCCGAACGATGGAGACGCACTCCGTTGTGACGCGTTTTTGCCTGGTGTGC 254321 |||||||||| || | || |||| |||| || ||||| || ||| || | ||| Sbjct 45358 GCCGCCCTCCGACGCATCATCGAGAACTACTCTCGAGTCACGCGCTTCTGCTTGATCTGC 45299 Query 254322 AACTACGT 254329 |||||||| Sbjct 45298 AACTACGT 45291 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073618601759424