Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq6640 159 4e-34 seq803 159 4e-34 >seq6640 Length=3469 Score = 159 bits (176), Expect = 4e-34 Identities = 389/583 (67%), Gaps = 16/583 (3%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || |||||||||||||||||||| | || || | ||||| || | || Sbjct 2302 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 2243 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || ||||| || ||||| ||| || ||||| |||||| Sbjct 2242 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAG 2183 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC--------TCCATA-ACCGGCGCTG 33752 || || || || || || ||| | || || | ||| || | ||| | || Sbjct 2182 ATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTTG 2123 Query 33753 TCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 | ||||| | || ||||| ||||||||||| || || | |||| || || || Sbjct 2122 CAA---ATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCAT 2067 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33871 ||| ||||| | || || || | ||||||||| || || ||||| | || Sbjct 2066 GGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGA 2007 Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 ||||||||||| || ||||| || || || ||||| || |||||||| || | ||||| Sbjct 2006 GTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTC 1947 Query 33932 GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 || | ||||||||| | || || | || | || || || || ||||| || Sbjct 1946 GGGCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATACCATCGCT 1887 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTG-TTAGTTTAT 34050 ||| || || || |||| || || || || || | |||||||| | || | || | Sbjct 1886 GGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTTTCGTC-GTTGCTGAGCGAAG 1828 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| | || || || | ||| || || || | ||||| || || ||||| | Sbjct 1827 CCCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGG 1768 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 |||| || ||||| | ||| ||| || || |||| ||||| Sbjct 1767 CCTTCTTGTACATCTCCCAAATGCGCTGGTAGCGGATGGGGAA 1725 >seq803 Length=10940 Score = 159 bits (176), Expect = 4e-34 Identities = 389/583 (67%), Gaps = 16/583 (3%) Strand=Plus/Minus Query 33582 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAAAACGTGAGT 33641 || || || |||||||||||||||||||| | || || | ||||| || | || Sbjct 2308 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 2249 Query 33642 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCGGAAAAGAAG 33701 |||||||| ||||| ||||| || ||||| || ||||| ||| || ||||| |||||| Sbjct 2248 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGAGCAGAAAGAGCCGGAGAAGAAG 2189 Query 33702 ATTCCTTCTACTGCAGCAAAGGCAATAAGTCTCTC--------TCCATA-ACCGGCGCTG 33752 || || || || || || ||| | || || | ||| || | ||| | || Sbjct 2188 ATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTTG 2129 Query 33753 TCATGTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTAT 33811 | ||||| | || ||||| ||||||||||| || || | |||| || || || Sbjct 2128 CAA---ATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCAT 2073 Query 33812 GGCATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACT 33871 ||| ||||| | || || || | ||||||||| || || ||||| | || Sbjct 2072 GGCCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGA 2013 Query 33872 ATACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTC 33931 ||||||||||| || ||||| || || || ||||| || |||||||| || | ||||| Sbjct 2012 GTACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTC 1953 Query 33932 GGTAATCTGCACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCATCACT 33991 || | ||||||||| | || || | || | || || || || ||||| || Sbjct 1952 GGGCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGCT 1893 Query 33992 GGCTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTCTGGTGTT-AGTTTAT 34050 ||| || || || |||| || || || || || | || ||||| | |||| || | Sbjct 1892 GGCGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC-GTTGTTGAGCGAAG 1834 Query 34051 TCCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTG 34110 ||| | || || || | ||| || || || | ||||| || || ||||| | Sbjct 1833 CCCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGG 1774 Query 34111 CCTTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 34153 |||| || ||||| | ||| ||| || || |||| ||||| Sbjct 1773 CCTTCTTGTACATCTCCCAAATGCGCTGGTAGCGGATGGGGAA 1731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629733023369040