Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq6640 129 8e-25 seq803 125 9e-24 >seq6640 Length=3469 Score = 129 bits (142), Expect = 8e-25 Identities = 371/562 (66%), Gaps = 14/562 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || |||||||| ||||||||||| | || || | |||||| || | || Sbjct 2302 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 2243 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || ||||| Sbjct 2242 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 2184 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATG 36333 || || || || || || ||| | || || | ||| | || ||| || | Sbjct 2183 GATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTT 2124 Query 36334 T---ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 ||||| | || ||||| ||||||||||| || || | |||| ||||| || | Sbjct 2123 GCAAATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGG 2065 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | ||||| | || || || | ||||||||| || || || || | || | Sbjct 2064 CCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGAGT 2005 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 |||||||||| || ||||| || || || || || || |||||||| || | ||||||| Sbjct 2004 ACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 1945 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 | ||| ||||| | || || | || | || || || || || || |||| Sbjct 1944 GCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATACCATCGCTGG 1885 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGT--TTGGTGTTAGTTTATT 36627 | || || || |||| || || || || || | ||||||| ||| || || | Sbjct 1884 CGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTTTCGTCGTTGCTG--AGCGAAGC 1827 Query 36628 CCAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGC 36687 ||| | || || || | ||| || || || | ||||| || || ||||| || Sbjct 1826 CCAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGC 1767 Query 36688 CTTTTTATACATATTCCAGATG 36709 ||| || ||||| | ||| ||| Sbjct 1766 CTTCTTGTACATCTCCCAAATG 1745 >seq803 Length=10940 Score = 125 bits (138), Expect = 9e-24 Identities = 370/561 (66%), Gaps = 12/561 (2%) Strand=Plus/Minus Query 36158 CATGCGAAATCGCAGTGTAGACCCTCGTCTCTACTAATTAATTCGTTGGAAAACGTGAGT 36217 || || || |||||||| ||||||||||| | || || | |||||| || | || Sbjct 2308 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 2249 Query 36218 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGATCCAGAAAAGAA 36276 |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || ||||| Sbjct 2248 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 2190 Query 36277 AATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATA---ACCGGCACTGTCAT- 36332 || || || || || || ||| | || || | ||| | || ||| || | Sbjct 2189 GATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTT 2130 Query 36333 --GTATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATTGTCTCTATAG 36389 ||||| | || ||||| ||||||||||| || || | |||| ||||| || | Sbjct 2129 GCAAATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGG 2071 Query 36390 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCAATCAAAAGACTAT 36449 | ||||| | || || || | ||||||||| || || || || | || | Sbjct 2070 CCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGAGT 2011 Query 36450 ACATTTCCGAATGAATGTTTTCAATGGCCATTTGAAATCCGTAGAAACATCTAGCCTCGG 36509 |||||||||| || ||||| || || || || || || |||||||| || | ||||||| Sbjct 2010 ACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 1951 Query 36510 TAATCTGTACTTCTGTACAAAATCGTTCTGCTAAATTTTCATTCACTATTCCGTCACTGG 36569 | ||| ||||| | || || | || | || || || || || || |||| Sbjct 1950 GCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGCTGG 1891 Query 36570 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTTTGGTGTT-AGTTTATTC 36628 | || || || |||| || || || || || | || ||| | | |||| || | | Sbjct 1890 CGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCG-TCGTTGTTGAGCGAAGCC 1832 Query 36629 CAATCATTGATATCTTTAGATATATCCACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 36688 || | || || || | ||| || || || | ||||| || || ||||| ||| Sbjct 1831 CAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCC 1772 Query 36689 TTTTTATACATATTCCAGATG 36709 || || ||||| | ||| ||| Sbjct 1771 TTCTTGTACATCTCCCAAATG 1751 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658084415620120