Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq6640 84.2 2e-11 seq803 84.2 2e-11 >seq6640 Length=3469 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATT-TGCGGCCAT 22799 |||||| | | ||| || || || || ||| || | || || || || || ||| |||| Sbjct 2151 CGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTTTCTGCT-CCAT 2209 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 |||||||| ||||| || || ||||| || | || || ||||||| | || || Sbjct 2210 CTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACGAGCTTATCAG 2269 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 ||| ||||| ||||| ||||| ||||||||||| Sbjct 2270 CCGCGACGAGGGTCTGCACTGCGACTTTGCTTG 2302 >seq803 Length=10940 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/153 (73%), Gaps = 2/153 (1%) Strand=Plus/Plus Query 22741 CGTCTCTTGGCCTTTGCGGCTGTTGAAGGCGTCATGTTTTCTGGGTCATT-TGCGGCCAT 22799 |||||| | | ||| || || || || ||| || | || || || || || ||| |||| Sbjct 2157 CGTCTCATCGGCTTCGCCGCGGTCGAGGGCATCTTCTTCTCCGGCTCTTTCTGCT-CCAT 2215 Query 22800 ATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAACGAGTTGATTAG 22859 |||||||| ||||| || || ||||| || | || || ||||||| | || || Sbjct 2216 CTTCTGGCTCAAGAAGCGCGGCCTGATGCCCGGTCTTGCCTTCAGCAACGAGCTTATCAG 2275 Query 22860 CCGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 ||| ||||| ||||| ||||| ||||||||||| Sbjct 2276 CCGCGACGAGGGTCTGCACTGCGACTTTGCTTG 2308 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356186958223429