Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq6640 163 4e-35 seq803 161 1e-34 >seq6640 Length=3469 Score = 163 bits (180), Expect = 4e-35 Identities = 388/580 (67%), Gaps = 10/580 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || |||||||||||||||||||| | || || || |||||| || | || Sbjct 2302 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 2243 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || ||||| Sbjct 2242 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 2184 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG----CTGTCAT 50134 ||| || || || ||||| ||| | | || | ||| | | || | | | Sbjct 2183 GATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTT 2124 Query 50135 GTA--TCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191 | | |||| | || ||||| ||||||||||| || || | |||| || || |||| Sbjct 2123 GCAAATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGG 2065 Query 50192 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 50251 | ||||| | || || || | ||||||||| || || ||||| | || | Sbjct 2064 CCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGAGT 2005 Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 |||||||||| || ||||| || || || ||||| || |||||||| || | ||||||| Sbjct 2004 ACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 1945 Query 50312 TAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371 | ||||||||| | || || |||| | || || || || || || |||| Sbjct 1944 GCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATACCATCGCTGG 1885 Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTTAGTTTATTCC 50431 | || || || |||| || || || || || || ||||||| | | || | || Sbjct 1884 CGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTTTCGTCGTTGCTGAGCGAAGCCC 1825 Query 50432 AATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCCT 50491 | | || || || | ||| || || || | ||||| || || ||||| |||| Sbjct 1824 AGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCCT 1765 Query 50492 TTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 | || ||||| | ||| ||| || || |||| ||||| Sbjct 1764 TCTTGTACATCTCCCAAATGCGCTGGTAGCGGATGGGGAA 1725 >seq803 Length=10940 Score = 161 bits (178), Expect = 1e-34 Identities = 390/581 (67%), Gaps = 12/581 (2%) Strand=Plus/Minus Query 49960 CATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAAAACGTGAGT 50019 || || || |||||||||||||||||||| | || || || |||||| || | || Sbjct 2308 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 2249 Query 50020 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCA-AATGACCCAGAAAAGAA 50078 |||||||| ||||| ||||| || ||||| || ||||| ||| || || || || ||||| Sbjct 2248 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 2190 Query 50079 GATTCCTTCTACTGCGGCAAAGGCAACAAGTCTCTCTCCATAACTGGCG----CTGTCAT 50134 ||| || || || ||||| ||| | | || | ||| | | || | | | Sbjct 2189 GATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTT 2130 Query 50135 GTA--TCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 50191 | | |||| | || ||||| ||||||||||| || || | |||| || || |||| Sbjct 2129 GCAAATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGG 2071 Query 50192 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATAAGTATCGATCAAAAGACTAT 50251 | ||||| | || || || | ||||||||| || || ||||| | || | Sbjct 2070 CCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGAGT 2011 Query 50252 ACATTTCCGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTAGCCTCGG 50311 |||||||||| || ||||| || || || ||||| || |||||||| || | ||||||| Sbjct 2010 ACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 1951 Query 50312 TAATCTGCACTTCTGTACAAAATCGTTCAGCTAAATTTTCATTCACTATTCCGTCACTGG 50371 | ||||||||| | || || |||| | || || || || || || |||| Sbjct 1950 GCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGCTGG 1891 Query 50372 CTGCAAAAAACGCCAATACATGTTTTATAAAATGTTTTTCGTTGGGTGTT-AGTTTATTC 50430 | || || || |||| || || || || || || || ||| | | |||| || | | Sbjct 1890 CGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCG-TCGTTGTTGAGCGAAGCC 1832 Query 50431 CAATCATTGATATCTTTAGATATATCTACTTCTTCCACTGTCCAAAATGATGCCTCTGCC 50490 || | || || || | ||| || || || | ||||| || || ||||| ||| Sbjct 1831 CAGTGCTTCATGTCGGCGCTCAAATCGACCTCCTCGGCGGTCCAGAACGAGGCCTCGGCC 1772 Query 50491 TTTTTATACATATTCCAGATGTCATGATATTGGATTGGGAA 50531 || || ||||| | ||| ||| || || |||| ||||| Sbjct 1771 TTCTTGTACATCTCCCAAATGCGCTGGTAGCGGATGGGGAA 1731 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718172345478520