Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_004105.1 Length=209771 Score E Sequences producing significant alignments: (Bits) Value seq6640 145 1e-29 seq803 141 1e-28 >seq6640 Length=3469 Score = 145 bits (160), Expect = 1e-29 Identities = 314/463 (68%), Gaps = 10/463 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||||||||||||||||| || | || || | |||||| || | || Sbjct 2302 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 2243 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| || || || || ||||| Sbjct 2242 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 2184 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATG 42240 ||| || || || || || ||| | || || | ||| | || ||| || | Sbjct 2183 GATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTT 2124 Query 42241 T---ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 ||||| | || ||||| ||||||||||| || || | |||| || || |||| Sbjct 2123 GCAAATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGG 2065 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | ||||| | || || || | ||||||||| || || ||||| | || | Sbjct 2064 CCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGAGT 2005 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 ||||||| || || ||||| || || || ||||| || |||||||| || | ||||||| Sbjct 2004 ACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 1945 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 ||||| ||||| | || || |||| | || ||| || || || || |||| Sbjct 1944 GCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATACCATCGCTGG 1885 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 42519 | || || || |||| || || || || || | |||||||| Sbjct 1884 CGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTTTCGTC 1842 >seq803 Length=10940 Score = 141 bits (156), Expect = 1e-28 Identities = 313/463 (68%), Gaps = 10/463 (2%) Strand=Plus/Minus Query 42065 CATGCGAAATCGCAGTGCAGACCCTCATCTCTACTAATTAATTCGTTGGAAAACGTGAGT 42124 || || || ||||||||||||||||| || | || || | |||||| || | || Sbjct 2308 CAAGCAAAGTCGCAGTGCAGACCCTCGTCGCGGCTGATAAGCTCGTTGCTGAAGGCAAGA 2249 Query 42125 CCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATAGACGCA-AATGATCCAGAAAAGAA 42183 |||||||| ||||| ||||| || ||||| || || || ||| || || || || ||||| Sbjct 2248 CCGGGCATCAGGCCGCGCTTCTTGAGCCAGAAGATGGA-GCAGAAAGAGCCGGAGAAGAA 2190 Query 42184 GATTCCTTCTACTGCCGCAAAGGCAATAAGTCTCTCTCCATAAC---CGGCACTGTCATG 42240 ||| || || || || || ||| | || || | ||| | || ||| || | Sbjct 2189 GATGCCCTCGACCGCGGCGAAGCCGATGAGACGCTCGGGGAAGGTCTCGACACCCTCCTT 2130 Query 42241 T---ATCCA-CTTTTGAGCCCAATCGGCCTTCTTTTTTACACAAGGCATCGTTTCTATGG 42296 ||||| | || ||||| ||||||||||| || || | |||| || || |||| Sbjct 2129 GCAAATCCAGCGCATG-GCCCACTCGGCCTTCTTCTTCACCGAGGGCACAGTCTCCATGG 2071 Query 42297 CATTAAAGAGATAGtttttttCATTACTATCTTTAACATATGTATCGATCAAAAGACTAT 42356 | ||||| | || || || | ||||||||| || || ||||| | || | Sbjct 2070 CCCGGAAGAGGTGGTCCTTCTCGATCGGATCTTTAACGTAGGTGTCGATGAGGAGCGAGT 2011 Query 42357 ACATTTCTGAATGAATGTTTTCAATGGCCATCTGAAATCCGTAGAAACATCTGGCCTCGG 42416 ||||||| || || ||||| || || || ||||| || |||||||| || | ||||||| Sbjct 2010 ACATTTCCGAGTGGATGTTCTCGATAGCGATCTGGAAGCCGTAGAAGCAGCGCGCCTCGG 1951 Query 42417 TAACCTGTACTTCTGTACAAAATCGTTCAGCTAAATTTTCGTTCACTATTCCGTCACTGG 42476 ||||| ||||| | || || |||| | || ||| || || || || |||| Sbjct 1950 GCACCTGCACTTCCTTCATGAAGCGGCCAGCCAGGTTCTCGGCGACGATGCCATCGCTGG 1891 Query 42477 CTGCAAAAAACGCCAATACATGTTTTATAAAATATTTTTCGTC 42519 | || || || |||| || || || || || | || ||||| Sbjct 1890 CGGCGAAGAAGGCCAGCACGTGCTTGATGAAGTGCTTCTCGTC 1848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 671049074394680