Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Acanthamoeba_20lenticulata_20[genbank_20GCA_5F002179805.1_202017-06- 08] 10,743 sequences; 75,569,356 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq1020 91.5 1e-13 seq6640 89.7 5e-13 seq803 89.7 5e-13 seq358 82.4 8e-11 >seq1020 Length=19758 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/198 (70%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 || || || || || |||||||| ||| || || | ||| ||||| || || ||| Sbjct 16327 GTCGACTCCTTCTGGATGTTGTAGTCGGCCAAGGTACGGCCGTCCTCGAGCTGCTTGCCA 16268 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 || |||| ||||| ||||| || || || ||||| || ||||| || ||||| || Sbjct 16267 GCGAAGATGAGACGCTGCTGGTCCGGGGGAATGCCCTCCTTGTCCTGGATCTTTTGCTTC 16208 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | |||||||| || || || || | || | ||||||||||||| || Sbjct 16207 ACGTTCTCGATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTGCCGGTCAGAGTC 16148 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 16147 TTGACGAAGATCTGCATA 16130 >seq6640 Length=3469 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/229 (69%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 || || ||||| ||||| || ||||| ||||||| | | |||||||| | | ||| Sbjct 2364 GAGGCTGTCGAGATCGAGAAGGAGTTCGTCACGGAATCGCTGCCCGTGGCTCTTATTGGC 2423 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGA-CAGATTGTTGTTG-- 50748 |||||||| || | |||||| ||||||| ||||| || || || | | || | || | Sbjct 2424 ATGAACGCCAACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGGCTTCTCGTCGCT 2483 Query 50749 --CAGCTGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACA 50806 | |||| ||||| | |||| || || ||||| || |||| ||| | | Sbjct 2484 CTCGGCTGTGACAAGC-----ACTACAACTCATCCAACCCGTTCCCGTGGATGGAGCTTA 2538 Query 50807 TATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATA 50855 | ||| | || ||||| || ||||| |||||| | || || ||||| || Sbjct 2539 TTTCGCTTGAAGGCAAGACCAACTTCTTCGAACGCCGCGTTGGCGAGTA 2587 >seq803 Length=10940 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/229 (69%), Gaps = 10/229 (4%) Strand=Plus/Plus Query 50632 GAAGCCGTCGACATCGAAAAAGAGTTTTTCACGGACGCTTTACCCGTGGCATTGTTGGGC 50691 || || ||||| ||||| || ||||| ||||||| | | |||||||| | | ||| Sbjct 2370 GAGGCTGTCGAGATCGAGAAGGAGTTCGTCACGGAATCGCTGCCCGTGGCTCTTATTGGC 2429 Query 50692 ATGAACGCAGACATGATGTGCGAGTACATTGAGTTTGTTGCAGA-CAGATTGTTGTTG-- 50748 |||||||| || | |||||| ||||||| ||||| || || || | | || | || | Sbjct 2430 ATGAACGCCAACCTCATGTGCCAGTACATCGAGTTCGTCGCCGACCGGCTTCTCGTCGCT 2489 Query 50749 --CAGCTGGGACAACCGAAATACTATAATGCACGTAACCCCTTTCCGTTTATGAATAACA 50806 | |||| ||||| | |||| || || ||||| || |||| ||| | | Sbjct 2490 CTCGGCTGTGACAAGC-----ACTACAACTCATCCAACCCGTTCCCGTGGATGGAGCTTA 2544 Query 50807 TATCGTTGGAGGGCAAAACAAACTTTTTCGAAAGACGTGTAGGCGAATA 50855 | ||| | || ||||| || ||||| |||||| | || || ||||| || Sbjct 2545 TTTCGCTTGAAGGCAAGACCAACTTCTTCGAACGCCGCGTTGGCGAGTA 2593 >seq358 Length=114647 Score = 82.4 bits (90), Expect = 8e-11 Identities = 144/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 142976 ACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCG 143035 || || |||| || || || || || |||||||| || | || | ||| ||| Sbjct 5170 ACCAAGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGCGAGGGTACGGCCGTCCTCG 5229 Query 143036 AGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTA 143095 || || || ||||| |||| || || ||||| || || || ||||| || ||||| | Sbjct 5230 AGCTGCTTGCCAGCGAAGATGAGGCGCTGCTGGTCCGGGGGGATGCCCTCCTTGTCCTGA 5289 Query 143096 ATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTG 143155 || || || || | | || | |||||||| || || || || | || | |||||| Sbjct 5290 ATCTTCTGCTTCACGTTCTCGATCGTGTCCGAGGACTCGACCTCGAGCGTAATGGTCTTG 5349 Query 143156 CCGGTCAATGTTTTTACGAATATTTGCATA 143185 ||||||| || || ||||| || |||||| Sbjct 5350 CCGGTCAGAGTCTTGACGAAGATCTGCATA 5379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 506946314303760